Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq75688 91.5 2e-16 seq18772 73.4 6e-11 >seq75688 Length=7763 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 1107 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1050 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| ||||| ||||||||||||| |||| Sbjct 1049 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGTATCC 996 >seq18772 Length=21148 Score = 73.4 bits (80), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||| | | | |||| | ||||| | || | || |||| || || | Sbjct 2184 GTACAAGAGGAACCACAGGCT-CAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2241 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||| ||||| |||| ||||||||||| | || || Sbjct 2242 AGTGTGAAGCTACCATCTGTGGGATTATGACTGAATGCCTGTAAGTCAGAATTC-TGGCA 2300 Query 121 GAAC 124 |||| Sbjct 2301 GAAC 2304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818252655872