Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq45093 82.4 2e-13 seq27866 77.0 1e-11 >seq45093 Length=50950 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 40258 TACTTAGACATGCATGTCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 40208 >seq27866 Length=71048 Score = 77.0 bits (84), Expect = 1e-11 Identities = 87/116 (75%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||| ||||| | || |||||| | |||| ||||| | || | ||||| Sbjct 19733 ACTCATTCCAGTTACAGGNCCTGGAAAGAGTCTTGTAGTGTTATTTTTCATCCCAACCTC 19674 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 || | ||| | || |||| |||| | ||||||| ||||||||||| |||||||| Sbjct 19673 CCTGGGTCCAAAGTGTGTAAATTGCACTCCTGCTGTCTTCCTTGGATATGGTAGCC 19618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508596990208