Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq44403 98.7 8e-16 seq44856 93.3 3e-14 seq14694 89.7 4e-13 >seq44403 Length=740699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| ||||||| || ||||| ||||| || | || || || Sbjct 626571 GGTATACTCTACTATTTCTGTGCACAAGTTGCTGCATTTGATGGTTCCTAGGTTTTGCTG 626512 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | |||||| || ||||| ||||| || Sbjct 626511 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTCTCTGTCTG 626452 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 || ||||||||||| | |||||| Sbjct 626451 AGATTCAATGATGGCATACCAAAG 626428 Score = 93.3 bits (102), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||| || ||||| ||||| || | Sbjct 624554 CATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGCTCTTCCTT 624495 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 624494 CCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 624436 Query 66459 AGATGGCGAA 66468 | ||||| || Sbjct 624435 AAATGGCAAA 624426 >seq44856 Length=74269 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||||||||| ||||| ||||| || | ||||| || |||||||| ||||| || | Sbjct 45411 TGGAACGTTTTAGTCAGGAAGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 45470 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || || |||||||| || || |||||||||||| | || || || || |||||||| | Sbjct 45471 TTCTGATCGAGAATGTTCATTCAGAGATGTACAGTTTACTAATAGACACTTACATCAGAG 45530 Query 61376 A 61376 | Sbjct 45531 A 45531 >seq14694 Length=1798513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || ||||| | ||||| ||||||||||| |||||||||||||||||||| || Sbjct 775651 CAAGAAGTTCAAGTCACAGAGGCCCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 775592 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | || || || ||||||||| | || || || || ||||| Sbjct 775591 ATACATTCTGANATGTACAGTCTCCTTATTGACACTTACAT 775551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396989594840720