Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq159 156 6e-36 seq1 100 4e-19 seq38 75.2 2e-11 >seq159 Length=811358 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 664006 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 663949 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 663948 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAATGGGTT 663889 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||| ||| | || || ||| |||| |||||| |||||| Sbjct 663888 ACCCGCGCCTGCCGGTATAGGGTAGGCACACGCTGAGCCAGTCAGCGTAGCGTGCGTGCA 663829 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||| ||||||||||||||||||||||||| ||||| || ||||| Sbjct 663828 GCCCCGGACATTTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 663776 >seq1 Length=83735184 Score = 100 bits (110), Expect = 4e-19 Identities = 165/228 (72%), Gaps = 10/228 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || || | || || || ||| ||| | |||||| |||||| | Sbjct 45353446 GTACAAAGGGCAGGGACTTAATCCATGCAAGTTT-ATGCCTCACCCTTACTGGGAATT-C 45353389 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGA-T 118 |||||| | || | |||||| ||| ||||||||||| | ||| ||||||| | Sbjct 45353388 CTCGTTCATACGGAATGACTGCAAT-ATCCATCCCCATCACAAATGAG--TTCAAAGGGT 45353332 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| |||| ||| |||| | || | ||| |||||| | || | | Sbjct 45353331 TACCCGAGCCTGCTGGCAAAGGGTAGGCACACACTGAGCCAGTCAGTGCACTGCA--TAC 45353274 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 || | | |||||||||||||||| |||||||||||| ||||| ||| Sbjct 45353273 AGCTCTGGACATCTAAGGGCATCAGAGACCTGTTATT-ACTCAATCTT 45353227 >seq38 Length=19718263 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 |||||||||||| ||||| |||| | ||||||||| ||||||||||||| |||||| Sbjct 8605417 TCAGTGTAGCGCACGTGCAGCCCCGGACATCTAAGAGCATCACAGACCTATTATTG 8605472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751924083015