Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq71 145 3e-32 seq44 132 2e-28 seq4 100 1e-18 seq136 93.3 2e-16 seq13 93.3 2e-16 seq2 89.7 2e-15 >seq71 Length=9112543 Score = 145 bits (160), Expect = 3e-32 Identities = 104/120 (87%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 2142259 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 2142200 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | |||||| ||| ||||||||||| | ||| | |||||||||||||||| Sbjct 2142199 GTGGAGGTCCTTAGCGGTCCTGACGTGCAAATCGGTTGTCCGACTTGGGTATAGGGGCGA 2142140 >seq44 Length=17152255 Score = 132 bits (146), Expect = 2e-28 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || |||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1994032 TGTTAGGCCCCGAAAGATGGTGAACTATACCTGGGCAGGGTGAAGCCAGAGGAAACTCTG 1994091 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||| || || ||| ||| ||||||||||| ||||| | |||||||||| || Sbjct 1994092 GTGGAGGTCCGTAGAGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGAGC 1994149 >seq4 Length=59374630 Score = 100 bits (110), Expect = 1e-18 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | ||| | | |||||| | | ||||| ||||||| Sbjct 51812882 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAACGAGTGGTAAACTCCGTCTAAGGCTAAAT 51812823 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||| |||| |||| || | | ||||| ||||||| |||||| | Sbjct 51812822 ACCGGCATGAGACCAATAGTCAACAAATAACATAAGGGAAAGTTGAAAAGAACTTTGAAG 51812763 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 51812762 AGAGAGTTCAAGAGGGCGTGAAA 51812740 Score = 95.1 bits (104), Expect = 5e-17 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| |||||||| || ||||||||||| ||| | ||||||||||||||||| |||| Sbjct 57781495 CTGTTAGGACCCGAGAGCTGGTGAACTATATCTGGGT-GGGTGAAGCCAGAGGAAGCTCT 57781437 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 || ||||| |||||| ||| | |||| |||| ||||| | ||||| ||||| Sbjct 57781436 GGCGGAGGTCTATAGCGGTCCTGACATGCATATCGGTCGTCCGACCTGGGTTTAGGG 57781380 >seq136 Length=2036769 Score = 93.3 bits (102), Expect = 2e-16 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | ||| | ||| || | | ||||| |||||| Sbjct 1805351 GAGTCAGGTTGCTTGGGAATGCAGC-CCAAAGCGATGGTTAACTCCATCTAAGGCTAAAC 1805293 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||| || ||||||| || | ||||| ||||||| |||||| | Sbjct 1805292 ACCGGCATGAGACCGACAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 1805233 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 1805232 AGAGAGTTCAAGAGGGCGTGAAA 1805210 >seq13 Length=39823089 Score = 93.3 bits (102), Expect = 2e-16 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||| ||||||||||||||||||||| | || ||||||||||||||||| |||||||| Sbjct 19726231 ACCGGAAAGATGGTGAACTATGCCTTGGCAAGGCGAAGCCAGAGGAAACTCCGGTGGAGG 19726172 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | || ||| ||| | || |||| | ||||| | |||||||| |||| Sbjct 19726171 TCTGTAGTGGTCCTGACATGTAAATTGGTCGTCCGACCTGGGTATAAGGGC 19726121 >seq2 Length=73975804 Score = 89.7 bits (98), Expect = 2e-15 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 10395559 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 10395500 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||| |||| |||||| | | ||||| ||||||| |||||| | Sbjct 10395499 ACCGGCACGAGACCAATAGTCAACAAGT--ACCAAGGGAAAGTTGAAAAGAACTTTGAAG 10395442 Query 160 AGAGAG 165 |||||| Sbjct 10395441 AGAGAG 10395436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079776469550