Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq15 118 2e-24 seq38 95.1 2e-17 seq159 89.7 8e-16 >seq15 Length=37907650 Score = 118 bits (130), Expect = 2e-24 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| | | ||||| ||||||||| ||||||||||||||||||| ||||||| Sbjct 8251523 CTATTTAGCATGCCAGAGTCTCATTCGTTATCAGAATTAACCAGACAAATCAGTCCACCA 8251464 Query 202 ACTAAGAACGGCCATGCACCACCACCCA 229 ||||||||| |||||||||||||||||| Sbjct 8251463 ACTAAGAACAGCCATGCACCACCACCCA 8251436 >seq38 Length=19718263 Score = 95.1 bits (104), Expect = 2e-17 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| ||||| |||| | ||||||||| ||||||||||||| |||||| | Sbjct 8605416 GTCAGTGTAGCGCACGTGCAGCCCCGGACATCTAAGAGCATCACAGACCTATTATTG-AT 8605474 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | ||| |||||||||| Sbjct 8605475 CAATC-TCGGATGGCTGAATGCCACTTGTCTCTCTAAGAAG 8605514 >seq159 Length=811358 Score = 89.7 bits (98), Expect = 8e-16 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||| |||||| |||||| |||| | |||| ||||||||||||||||||||||||| || Sbjct 663848 GTCAGCGTAGCGTGCGTGCAGCCCCGGACATTTAAGGGCATCACAGACCTGTTATTG-CT 663790 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCT 107 ||| | || |||||| | |||| | |||||| Sbjct 663789 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCT 663758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796719560301