Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq159 174 3e-41 seq1 107 4e-21 seq38 86.0 1e-14 >seq159 Length=811358 Score = 174 bits (192), Expect = 3e-41 Identities = 173/223 (78%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||||||||| |||| | |||| |||||| |||||| Sbjct 663784 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAAATGTCCGGGGCTGCACGCACGCTAC 663842 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||| | || || || | | ||| |||| ||| |||||| | | || | Sbjct 663843 GCTGACTGGCTCAGCGTGTGCCTACCCTATACCGGCAGGCGCGGGTAACCCATTGAACCC 663902 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| Sbjct 663903 CATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAG 663962 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| ||| |||||||||| |||||||||||||||| Sbjct 663963 TGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 664005 >seq1 Length=83735184 Score = 107 bits (118), Expect = 4e-21 Identities = 161/224 (72%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| |||||||||||| |||||||||||||||| | | || | | || | Sbjct 45353227 AAGATTGAGT-AATAACAGGTCTCTGATGCCCTTAGATGTCCAGAGCTGTATGCAG--TG 45353283 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||| | || | || | | |||| ||| | ||| |||||| | | || ||| Sbjct 45353284 CACTGACTGGCTCAGTGTGTGCCTACCCTTTGCCAGCAGGCTCGGGTAACCCT-TTGAAC 45353342 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 || | ||| ||||||| || |||||| | ||| | | |||||||||| || ||||| Sbjct 45353343 TCATTTGTGATGGGGATGGAT-ATTGCAGTCATTCCGTATGAACGAGGAATTCCCAGTAA 45353401 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | | | ||| | | || | ||||| |||||||||||||||| Sbjct 45353402 GGGTGAGGCATAAACTTGCATGGATTAAGTCCCTGCCCTTTGTA 45353445 >seq38 Length=19718263 Score = 86.0 bits (94), Expect = 1e-14 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||| ||| | ||| | |||| || || |||| |||||| ||||||||| Sbjct 8605514 CTTCTTAGAGAGACAAGTGGCATTCAGCC-ATCCGAGATTGAT-CAATAATAGGTCTGTG 8605457 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||| ||||||||| | |||| ||||| ||||||||||||||| Sbjct 8605456 ATGCTCTTAGATGTCCGGGGCTGCACGTGCGCTACACTGACAG 8605414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947101292288