Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq26 279 2e-72 seq49 210 7e-52 seq61 158 4e-36 seq51 116 1e-23 seq75 78.8 3e-12 >seq26 Length=25362064 Score = 279 bits (308), Expect = 2e-72 Identities = 182/199 (91%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||| |||||||||||| || |||||||| ||||||||||||||||||| || ||| | Sbjct 4900007 TTCCCTGGGCTGTGGTTTCCCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCTA 4900066 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 4900067 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAGGAGAGTCATAGTTA 4900126 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||| ||||||||||||||||| ||| |||||||| |||||||||| ||||||||||| Sbjct 4900127 CTCCTGCCGTTTACCCGCGCTTCATTGCCTTTCTTCA-TTTGACATTCTGAGCACTGGGC 4900185 Query 513 AGAAATCACATTGCGTCAA 531 ||| ||||||| ||||||| Sbjct 4900186 AGAGATCACATCGCGTCAA 4900204 >seq49 Length=14824766 Score = 210 bits (232), Expect = 7e-52 Identities = 183/228 (80%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||| |||||| ||||| Sbjct 8639791 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTGGAGTCAGGCTCAG 8639732 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||| ||||| |||||||| | ||||||||||||||||||| || Sbjct 8639731 CAGGGTCTTCCTTCCCAGCTGATTCTG---------TTCCCTTGGCTGTGGTTTCACTGC 8639681 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| || ||| || ||||||||||| || ||||||||||| || |||||||||| | Sbjct 8639680 ATAGCAGGTAGAGAGGGTGGGAATCTCCTTCATCCATTCATGTGCATCACTAATTA---G 8639624 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 | |||||||||| | ||||||| ||||||||||||||||| ||||| Sbjct 8639623 AGGAGGCATTTGATTGCCTTAAGGGAGTCATAGTTACTCCCCTCGTTT 8639576 >seq61 Length=11280617 Score = 158 bits (174), Expect = 4e-36 Identities = 110/125 (88%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 ||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct 953742 ATTAGATGATGAGGCATTTGGCTATCTTAAGAGAGTCATAGTTACTCCTTCCATTTACCC 953801 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||| |||||||||| |||||| |||||||||||||||| |||||||||||| || Sbjct 953802 TGGCTTCATTGAATTTCTGCACTTTCACATTCAGAGCACTGGACAGAAATCACATCCTGT 953861 Query 529 CAACA 533 ||||| Sbjct 953862 CAACA 953866 >seq51 Length=13772779 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| ||||||| |||| ||| | | ||| ||||||||||||||| Sbjct 6625750 CTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAATTCGCCTAAGGACACCTGCGTTAGC 6625691 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| |||||||||||||||||| |||| Sbjct 6625690 ATTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACACTGTC 6625644 Score = 80.6 bits (88), Expect = 9e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||| |||| ||||| || ||| ||||| | | | | |||||||||||||||| Sbjct 6625584 CTACCACTTACTCTATACCTCCCATGTCTCTTCACCATGCCAGCCTAGAGTCAAGCTCAA 6625525 Query 297 CAGGGTCTTCTTTC 310 |||||||||||||| Sbjct 6625524 CAGGGTCTTCTTTC 6625511 >seq75 Length=8362580 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| |||||| |||| ||| || |||||||||| ||| Sbjct 556480 CTTCTGCTCCACAGGAGGTTTCTGACCTCCCGGAGCTAAGGTTGGGACACCTGCATTACC 556539 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||| |||| || ||| ||||| |||||||||||||||||| ||| Sbjct 556540 ATTTGACAGGAGTACCGTCCCAGTCAAACTCCCCACCTGACACTGT 556585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635029595808