Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq13 102 1e-19 seq27 100 5e-19 seq51 86.0 1e-14 >seq13 Length=39823089 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 28868021 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 28867964 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 28867963 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATC 28867911 >seq27 Length=28746179 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 28640876 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 28640933 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 28640934 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 28640987 >seq51 Length=13772779 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||| || | |||||| | ||||| | || | || |||| || | || Sbjct 6626076 GTACAAGAGGAATGGCAGG-TTCAGAC-ATTTGGTATGTGTGCTTGGCTGAGGAGCCCGT 6626133 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||| ||||||||||||| Sbjct 6626134 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTGTAAGTCAGAATCC 6626187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819117298944