Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11 228 2e-57 seq7 149 2e-33 >seq11 Length=41765191 Score = 228 bits (252), Expect = 2e-57 Identities = 174/202 (86%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| ||||||| ||||| | ||||||||||||| | || |||| ||||||||||| Sbjct 23028289 AAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCTGGGTTGGGAGTGGGTAATTTG 23028348 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct 23028349 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGACGTTTCTCAGGTTCCCTCTCTAGAATCGA 23028408 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CA-CTATCCTACCATCGAAAG 203 ||||| ||||||||| ||| | | |||||||||||| || | | |||||||| |||| Sbjct 23028409 ACCCTGATTCCCCGTCACCTGGGGTCACCATGGTAGGCACAGCGA--CTACCATCAAAAG 23028466 Query 204 TTGATAGGGCAGAAATTTGAAT 225 ||||||||||||| |||||||| Sbjct 23028467 TTGATAGGGCAGACATTTGAAT 23028488 >seq7 Length=48563517 Score = 149 bits (164), Expect = 2e-33 Identities = 129/155 (83%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 |||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||| Sbjct 46279408 CTTGGATGTGGTAGCCATTTCTCAGGCTCCTTCTCCGGAATAGAACCCTGATTCCCCGTC 46279349 Query 162 ACCCGTTGATACCATGGTAGGCCACTATC--CTACCATCGAAAGTTGATAGGGCAGAAAT 219 |||||| | |||||||||||| || | | |||||||||||||||||||||||||| | Sbjct 46279348 ACCCGTGGTCACCATGGTAGGC-AC-AGCGACTACCATCGAAAGTTGATAGGGCAGACGT 46279291 Query 220 TTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT 254 | ||||| | ||||| | ||| |||||||| Sbjct 46279290 TCGAATGCTTCGTCGCC-ACCAGAGGGCATGCGAT 46279257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510242601216