Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq44 89.7 2e-12 >seq44 Length=17152255 Score = 89.7 bits (98), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 349094 CTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGG 349153 || || ||||||||||| |||||| | | | ||| |||||||||||||| | ||| Sbjct 11952366 CTTGGAATGCCCAGGGTGACGTTCATCTCGCCTCTGCCTGCAAAGTGGAAGGTGTTCAGG 11952425 Query 349154 GTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCG 349213 |||| ||||||| |||||| ||||||| |||| | || || | |||||| |||||| Sbjct 11952426 GTCATCTGCGTGGAGGGCTCTCCGATGCTCTGGGCAGCCAGCAGGCCTACAGCCTCGCCT 11952485 Query 349214 GG 349215 || Sbjct 11952486 GG 11952487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084454058492958