Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq88 134 2e-29
seq164 120 5e-25
>seq88
Length=11899542
Score = 134 bits (148), Expect = 2e-29
Identities = 176/238 (74%), Gaps = 12/238 (5%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||| |||||||||| || |||| || ||||| |||||||| |||||| |||||| |
Sbjct 2141415 GTACAATGGGCAGGGACTTAATCAATGCAAGCTTC-TGACTCGCACTTACTGGGAATT-C 2141358
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
||| || | | || ||||||||| | ||||||||||| |||| ||||| |
Sbjct 2141357 CTCATTCAGGGGGAATAATTGCAATCTCCGATCCCCATCAC----AAATGGCGTTCAACG 2141302
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
|||||| |||| | || ||| | || | ||| |||||||||||||||
Sbjct 2141301 GGTTACCCATGCCTGCCAGCGTAGGGTAGGCACATGCTGAGCCAGTCAGTGTAGCGCGCG 2141242
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| |||| | |||||||||||||||||||||| |||||| ||||| || |||||
Sbjct 2141241 TGCAGCCCCGGACATCTAAGGGCATCACAGACCCATTATTG-CTCAATCTCAGGTGGC 2141185
>seq164
Length=5921534
Score = 120 bits (132), Expect = 5e-25
Identities = 155/209 (74%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| |||
Sbjct 116821 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 116878
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||| || | | || || |||||| | || |||||||| | | ||||| | |||
Sbjct 116879 CTCCTTCATGGGGAATAACTGCAATCCCCAATTCCCATCACAAATGGAGTTCAAGGGTTA 116938
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|| | |||| |||| ||| | || | || ||||||||| | |||||| |
Sbjct 116939 CCTGCCCCTG-CGGCGTAGGGTAGGAACAC-ACGAGCCTGTCAGTGTAGTGTGCGTGCAG 116996
Query 181 CCCAGAACATCTAAGGGCATCACAGACCT 209
||| | |||||||||||||||||||||||
Sbjct 116997 CCCGGGACATCTAAGGGCATCACAGACCT 117025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751948021525
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |