Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq88 134 2e-29 seq164 120 5e-25 >seq88 Length=11899542 Score = 134 bits (148), Expect = 2e-29 Identities = 176/238 (74%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| |||||||||| || |||| || ||||| |||||||| |||||| |||||| | Sbjct 2141415 GTACAATGGGCAGGGACTTAATCAATGCAAGCTTC-TGACTCGCACTTACTGGGAATT-C 2141358 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 ||| || | | || ||||||||| | ||||||||||| |||| ||||| | Sbjct 2141357 CTCATTCAGGGGGAATAATTGCAATCTCCGATCCCCATCAC----AAATGGCGTTCAACG 2141302 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||| |||| | || ||| | || | ||| ||||||||||||||| Sbjct 2141301 GGTTACCCATGCCTGCCAGCGTAGGGTAGGCACATGCTGAGCCAGTCAGTGTAGCGCGCG 2141242 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| |||| | |||||||||||||||||||||| |||||| ||||| || ||||| Sbjct 2141241 TGCAGCCCCGGACATCTAAGGGCATCACAGACCCATTATTG-CTCAATCTCAGGTGGC 2141185 >seq164 Length=5921534 Score = 120 bits (132), Expect = 5e-25 Identities = 155/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 116821 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 116878 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || | | || || |||||| | || |||||||| | | ||||| | ||| Sbjct 116879 CTCCTTCATGGGGAATAACTGCAATCCCCAATTCCCATCACAAATGGAGTTCAAGGGTTA 116938 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | |||| |||| ||| | || | || ||||||||| | |||||| | Sbjct 116939 CCTGCCCCTG-CGGCGTAGGGTAGGAACAC-ACGAGCCTGTCAGTGTAGTGTGCGTGCAG 116996 Query 181 CCCAGAACATCTAAGGGCATCACAGACCT 209 ||| | ||||||||||||||||||||||| Sbjct 116997 CCCGGGACATCTAAGGGCATCACAGACCT 117025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751948021525