Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 2e-19
seq115 77.0 2e-12
>seq2
Length=37033868
Score = 100 bits (110), Expect = 2e-19
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 3 ACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGA 62
|||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| |
Sbjct 20559007 ACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCGCA 20559066
Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|| | ||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 20559067 TCGCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 20559121
>seq115
Length=10204928
Score = 77.0 bits (84), Expect = 2e-12
Identities = 87/117 (74%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|| |||||||||| || |||| | ||| || | | | |||| ||||| |||
Sbjct 5232991 GAGCCCAAAGACTCTGGTTTCCCAGAAGCTGGCCGGTGGGTCATGGGAATAACGCTGCCA 5232932
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||| | ||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 5232931 CATCGCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 5232875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278381377650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |