Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq164 138 2e-30 seq5 100 5e-19 >seq164 Length=5921534 Score = 138 bits (152), Expect = 2e-30 Identities = 200/278 (72%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| | | || ||| | | | |||| ||||||||||||||||||| Sbjct 117747 ATGCTCTTAGCTGAGTGTCCAGCGGGGCCCGAAGCGTTTATTTTGAAAAAATTAGAGTGT 117688 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 | |||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 117687 TTAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 117629 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| |||||| | Sbjct 117628 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGCCCGGGGGCCTTG 117569 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| | |||| | | || ||||| Sbjct 117568 GTATTGCTCCGCTAGAGGTGAAATTCTTGGACCGGCTCAAGAGGGAACAGAGCAAAAGCA 117509 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| | |||||||||||||| |||| ||||| Sbjct 117508 TTTGCCAAGAAAGTTTTCATTAATCA-AGAACAAAAGT 117472 >seq5 Length=33943787 Score = 100 bits (110), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 10/213 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| || |||| | | || ||| | | | |||||||||||||| | ||||| Sbjct 32501973 ATGCTCTTAGCTAAGTGTCCTGAGGGGCCCGAAGCATTTACTTTGAAAAATT---AGTGT 32501917 Query 98 TCAAAGCAGGCCTTTGCTCGAA-----TACATTAGCATGGAATAATAGAATAGGACGTGC 152 |||||||||||| || || ||| ||| ||||||| ||||||||| || Sbjct 32501916 TCAAAGCAGGCCCAAGCCGCAACTGGATACCGCAGCTAGGAATAACGGAATAGGACC-GC 32501858 Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||| ||||||||||| || || | | |||||||| | ||| || ||||| | Sbjct 32501857 GGTTCTAGTTTGTTGGTTTTCAGAACTGAGGCCATGATTAAGAAGGACAGCCGGGGACAT 32501798 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||| | || |||||||||||||||||| Sbjct 32501797 TCATATTGCACTGCTAGAGGTGAAATTCTTGGA 32501765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915134700480