Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq164 138 2e-30
seq5 100 5e-19
>seq164
Length=5921534
Score = 138 bits (152), Expect = 2e-30
Identities = 200/278 (72%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| | | || ||| | | | |||| |||||||||||||||||||
Sbjct 117747 ATGCTCTTAGCTGAGTGTCCAGCGGGGCCCGAAGCGTTTATTTTGAAAAAATTAGAGTGT 117688
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
| |||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 117687 TTAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 117629
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| ||||| |||||| |
Sbjct 117628 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGCCCGGGGGCCTTG 117569
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| | |||| | | || |||||
Sbjct 117568 GTATTGCTCCGCTAGAGGTGAAATTCTTGGACCGGCTCAAGAGGGAACAGAGCAAAAGCA 117509
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| | |||||||||||||| |||| |||||
Sbjct 117508 TTTGCCAAGAAAGTTTTCATTAATCA-AGAACAAAAGT 117472
>seq5
Length=33943787
Score = 100 bits (110), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 10/213 (5%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| || |||| | | || ||| | | | |||||||||||||| | |||||
Sbjct 32501973 ATGCTCTTAGCTAAGTGTCCTGAGGGGCCCGAAGCATTTACTTTGAAAAATT---AGTGT 32501917
Query 98 TCAAAGCAGGCCTTTGCTCGAA-----TACATTAGCATGGAATAATAGAATAGGACGTGC 152
|||||||||||| || || ||| ||| ||||||| ||||||||| ||
Sbjct 32501916 TCAAAGCAGGCCCAAGCCGCAACTGGATACCGCAGCTAGGAATAACGGAATAGGACC-GC 32501858
Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212
||||||| ||||||||||| || || | | |||||||| | ||| || ||||| |
Sbjct 32501857 GGTTCTAGTTTGTTGGTTTTCAGAACTGAGGCCATGATTAAGAAGGACAGCCGGGGACAT 32501798
Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
|||| | || ||||||||||||||||||
Sbjct 32501797 TCATATTGCACTGCTAGAGGTGAAATTCTTGGA 32501765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915134700480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |