Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq80 105 3e-20 seq16 86.0 3e-14 >seq80 Length=11829778 Score = 105 bits (116), Expect = 3e-20 Identities = 97/121 (80%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATG---CCTGAATAGGGTGAAGCCAGAGGAAACT 620 |||| |||||||||||||||||||||||| ||||| |||| |||||||| |||| | Sbjct 6327435 TGTTAGGACCCGAAAGATGGTGAACTATGATGCCTGAGCAGGGCGAAGCCAGCAGAAAGT 6327494 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 | |||||| || |||||| ||| |||||||| || ||||| | |||||||||||| Sbjct 6327495 --GCTGGAGGTCCGTAGCGGTGCTGACGTGCAAACCGGTCGTCCGACCTGGGTATAGGGG 6327552 Query 681 C 681 | Sbjct 6327553 C 6327553 >seq16 Length=26446888 Score = 86.0 bits (94), Expect = 3e-14 Identities = 95/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || | |||||| | | |||| ||||||| Sbjct 11209894 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCAAGTGGTAAACTCCAACTAAGGCTAAAT 11209953 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG--G 157 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 11209954 ACCGGCATGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 11210013 Query 158 AAAGAG 163 |||||| Sbjct 11210014 AAAGAG 11210019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079846954250