Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq164 185 1e-44
seq115 167 4e-39
seq159 136 6e-30
seq88 107 3e-21
seq4 89.7 8e-16
>seq164
Length=5921534
Score = 185 bits (204), Expect = 1e-44
Identities = 197/255 (77%), Gaps = 20/255 (8%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| | |||||| |||| | ||||||||||||||||||||||| || ||
Sbjct 116976 GTCAGTGTAGTGTGCGTGCAGCCCGGGACATCTAAGGGCATCACAGACCTTAGATG--CT 117033
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---AGCCACCAACCATA 131
||| | | | |||| | |||| | |||||||||||||| || | || | |
Sbjct 117034 CAATCC-CGGGTAGCTGAAGGCCACTTGTCCCTCTAAGAAGTTGGGAGACGCCGAG--TG 117090
Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183
||| |||| ||| |||||| | | ||||| |||||||||||||||||||
Sbjct 117091 CTCG--GGGGTCGCATAACTAGTTAGCATGCCA--GTCTCCTTCGTTATCGGAATTAACC 117146
Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243
||||||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 117147 AGACAAATCGCTCCACCAACTAAGAAGGGCCATGCACCACCACCCACGGAATCCAGAAAG 117206
Query 244 AGCTATCAATCTGTC 258
||||||||| |||||
Sbjct 117207 AGCTATCAAGCTGTC 117221
>seq115
Length=10204928
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 5233236 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 5233177
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 5233176 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 5233120
>seq159
Length=6770115
Score = 136 bits (150), Expect = 6e-30
Identities = 184/254 (72%), Gaps = 17/254 (7%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||| | || ||| | || | ||||| |||||||||||| | ||| | |||| |
Sbjct 3719998 GTCAGTGTACCATGCATGCAGTCCCGGACATCAAAGGGCATCACAAATCTGCTGTTGC-T 3720056
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131
||| || | |||||| | ||| | ||| ||||||| || || ||| |||
Sbjct 3720057 CAATCT-CGGGTGGCTGAATACCACTTGTCTCTCTAAGGAGTTAGGGGACACTGACC--- 3720112
Query 132 GTCGATGGGGCT-------ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184
| ||||| | | || ||| | | ||||| ||| |||| |||||||||||
Sbjct 3720113 --CCTTGGGGGTCATGTAAAGTTGGCATGCCAGAGTCTCCTTCCTTATAGGAATTAACCA 3720170
Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244
|||||||||||| ||||||||| | ||||||| |||| |||||| ||||||||||| |
Sbjct 3720171 GACAAATCACTCTGCCAACTAAGCAAGGCCATGTGCCACTACCCATGGAATCAAGAAAAA 3720230
Query 245 GCTATCAATCTGTC 258
|||| ||||||||
Sbjct 3720231 ACTATGAATCTGTC 3720244
>seq88
Length=11899542
Score = 107 bits (118), Expect = 3e-21
Identities = 86/101 (85%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | |||||||||||||||||||||| |||||| ||
Sbjct 2141257 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCCATTATTG-CT 2141199
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| | || |||||| | |||| | ||||||||||||||
Sbjct 2141198 CAATC-TCAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 2141159
>seq4
Length=36760021
Score = 89.7 bits (98), Expect = 8e-16
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228
|||| |||| ||| |||||| | ||| ||||||| |||| ||| |||||||||||||
Sbjct 15994728 TTATGAGAATGAACTAGACAATTAGCTCTACCAACTGAGAATGGCTATGCACCACCACCA 15994669
Query 229 ATAGAATCAAGAAAGAGCTATCAA 252
| ||||||||||||||||| ||||
Sbjct 15994668 ACAGAATCAAGAAAGAGCTGTCAA 15994645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796744924935
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |