Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq164 185 1e-44 seq115 167 4e-39 seq159 136 6e-30 seq88 107 3e-21 seq4 89.7 8e-16 >seq164 Length=5921534 Score = 185 bits (204), Expect = 1e-44 Identities = 197/255 (77%), Gaps = 20/255 (8%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| | |||||| |||| | ||||||||||||||||||||||| || || Sbjct 116976 GTCAGTGTAGTGTGCGTGCAGCCCGGGACATCTAAGGGCATCACAGACCTTAGATG--CT 117033 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---AGCCACCAACCATA 131 ||| | | | |||| | |||| | |||||||||||||| || | || | | Sbjct 117034 CAATCC-CGGGTAGCTGAAGGCCACTTGTCCCTCTAAGAAGTTGGGAGACGCCGAG--TG 117090 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| ||| |||||| | | ||||| ||||||||||||||||||| Sbjct 117091 CTCG--GGGGTCGCATAACTAGTTAGCATGCCA--GTCTCCTTCGTTATCGGAATTAACC 117146 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct 117147 AGACAAATCGCTCCACCAACTAAGAAGGGCCATGCACCACCACCCACGGAATCCAGAAAG 117206 Query 244 AGCTATCAATCTGTC 258 ||||||||| ||||| Sbjct 117207 AGCTATCAAGCTGTC 117221 >seq115 Length=10204928 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 5233236 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 5233177 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 5233176 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 5233120 >seq159 Length=6770115 Score = 136 bits (150), Expect = 6e-30 Identities = 184/254 (72%), Gaps = 17/254 (7%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| | || ||| | || | ||||| |||||||||||| | ||| | |||| | Sbjct 3719998 GTCAGTGTACCATGCATGCAGTCCCGGACATCAAAGGGCATCACAAATCTGCTGTTGC-T 3720056 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 ||| || | |||||| | ||| | ||| ||||||| || || ||| ||| Sbjct 3720057 CAATCT-CGGGTGGCTGAATACCACTTGTCTCTCTAAGGAGTTAGGGGACACTGACC--- 3720112 Query 132 GTCGATGGGGCT-------ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | ||||| | | || ||| | | ||||| ||| |||| ||||||||||| Sbjct 3720113 --CCTTGGGGGTCATGTAAAGTTGGCATGCCAGAGTCTCCTTCCTTATAGGAATTAACCA 3720170 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||||||| ||||||||| | ||||||| |||| |||||| ||||||||||| | Sbjct 3720171 GACAAATCACTCTGCCAACTAAGCAAGGCCATGTGCCACTACCCATGGAATCAAGAAAAA 3720230 Query 245 GCTATCAATCTGTC 258 |||| |||||||| Sbjct 3720231 ACTATGAATCTGTC 3720244 >seq88 Length=11899542 Score = 107 bits (118), Expect = 3e-21 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||| |||||| || Sbjct 2141257 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCCATTATTG-CT 2141199 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 2141198 CAATC-TCAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 2141159 >seq4 Length=36760021 Score = 89.7 bits (98), Expect = 8e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| |||| ||| |||||| | ||| ||||||| |||| ||| ||||||||||||| Sbjct 15994728 TTATGAGAATGAACTAGACAATTAGCTCTACCAACTGAGAATGGCTATGCACCACCACCA 15994669 Query 229 ATAGAATCAAGAAAGAGCTATCAA 252 | ||||||||||||||||| |||| Sbjct 15994668 ACAGAATCAAGAAAGAGCTGTCAA 15994645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796744924935