Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq286 168 1e-39 seq22 154 3e-35 >seq286 Length=2122597 Score = 168 bits (186), Expect = 1e-39 Identities = 125/145 (86%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||| |||| ||| |||| |||||||||||| ||||||||||||||| Sbjct 1076349 ATTAGTGGGTGA-CAATTCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCA 1076291 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||| |||||||||||||||| | | |||||||| ||||||| ||||||||||||||||| Sbjct 1076290 ACATTGAAGGATCAAAAAGCAGCATTGCTATGAATGCTTGGCAGCCACAAGCCAGTTATC 1076231 Query 210 CCTGTGGTAACTTTTCTGGCACCTC 234 ||||| ||||||||||| ||| || Sbjct 1076230 ACTGTGCTAACTTTTCTGACACTTC 1076206 >seq22 Length=23942346 Score = 154 bits (170), Expect = 3e-35 Identities = 160/208 (77%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCC----AGCTCACGTTC 86 ||||||||||||||||| |||||| |||| | ||||||| ||| | |||| ||| Sbjct 13201521 TCATCAGTAGGGTAAAATGAACCTGCCTCACAATGGTCTAATCCCTATTAAGTCACTTTC 13201580 Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||| |||||| ||||||||| | || |||||||||| |||||||||||| Sbjct 13201581 CCTCTTAGTGAGTGAACAAT-----GTTTGGTAAATTCTGCTTAACAATGATAGGAAGAA 13201635 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 | |||| |||| ||||||||| | | ||| ||||| ||||||| ||||||||| ||| Sbjct 13201636 CAGACAGTGAAGAATCAAAAAGTGCCATTGCTGTGAACACTTGGCTTCCACAAGCCTGTT 13201695 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTC 234 | || |||||||||||||||| | |||| Sbjct 13201696 A-CCTTGTGGTAACTTTTCTGACTCCTC 13201722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854339038560