Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq88 156 8e-36 seq164 141 2e-31 seq54 80.6 5e-13 >seq88 Length=11899542 Score = 156 bits (172), Expect = 8e-36 Identities = 194/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||| |||||||| Sbjct 2141159 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAATGGGTCTGTG 2141216 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || | || | | Sbjct 2141217 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCATGTGCCTAC 2141276 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC-TCTGTCGTGCTGGGGATAGAGCATT 249 ||| || || ||| ||||||| | ||| ||| | | ||| ||||||| | ||| Sbjct 2141277 CCTACGCTGGCAGGCATGGGTAA-CCCGTTGAACGCCATTTGTGATGGGGATCGGAGATT 2141335 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | || ||||||| || |||||| ||| |||| ||| || ||||| Sbjct 2141336 GCAATTATTCCCCCTGAATGAGGAATTCCCAGTAAGTGCGAGTCAGAAGCTTGCATTGAT 2141395 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||| ||||| Sbjct 2141396 TAAGTCCCTGCCCATTGTA 2141414 >seq164 Length=5921534 Score = 141 bits (156), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||||||||| | |||| |||||| | |||||||||||| || | Sbjct 117025 AGGTCTGTGATGCCCTTAGATGTCCCGGGCTGCACGCACACTACACTGACAG-GCTCGTG 116967 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGA 240 |||| | ||| |||| | || | || | |||| ||||| | ||| |||| | Sbjct 116966 TGTTCCTACCCTACGCCGCAGGGGCAGGTAACCCTTG---AACTCCATTTGTGATGGGAA 116910 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 | | | |||||| ||||| | | | || ||||||| || |||||| ||| ||||| ||| Sbjct 116909 TTGGGGATTGCAGTTATTCCCCATGAAGGAGGAATTCCCAGTAAGTGCGGGTCATAAGCT 116850 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||| |||||||||||||||| Sbjct 116849 TGCGTTGATTAAGTCCCTGCCCTTTGTA 116822 >seq54 Length=13469821 Score = 80.6 bits (88), Expect = 5e-13 Identities = 157/223 (70%), Gaps = 13/223 (6%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||| |||||||||||||| ||| | ||| ||||| ||| | | || | Sbjct 5544651 AGATTGAG-CAATAGCAGGTCTGTGATGCTCTTGGCTGTGCTGGGATGCAAGTGTGCAGC 5544709 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCC-GGAAG-GTCTGGGTAATCTTGTTAAA 223 | | |||| || | | | | ||| ||||| || || | | || | |||||| || Sbjct 5544710 ATTCACAGGCTCA--GCATGCCT-ACCCTGGCCTGGCAGAGGATAGG--AACTTGTTGAA 5544764 Query 224 C-TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 | | | ||| ||||||| ||| ||| |||||||| ||| | ||| |||||| | |||| Sbjct 5544765 CACCATTTGTGATGGGGATTGAGAATTACAATTATTACTCATGAACAAGGAATTCTTAGT 5544824 Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 ||| || ||||| || | | ||| || |||||||||| Sbjct 5544825 AAGTGCAGGTCATAGGCTCAC----CTTAAGTGCCTGCCCTTT 5544863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947132417280