Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq164 282 1e-73 seq2 168 2e-39 seq56 163 9e-38 seq21 122 3e-25 seq328 109 2e-21 >seq164 Length=5921534 Score = 282 bits (312), Expect = 1e-73 Identities = 398/546 (73%), Gaps = 56/546 (10%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTG-TCACTACCT 60 |||||||||||||||| | || ||||| |||| |||| || ||||||||| Sbjct 117936 ACTCATTCCAATTACAGGGCCTTGAAAGAAAGG-GTATTGTAATTTTTTCCTCACTACCT 117994 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| ||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 117995 CCCCAGGTCTGGAGTGGGTATTTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 118054 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||| ||||||||||||| ||| ||||| |||||| | ||||||||| Sbjct 118055 TCTCAGGCTCCCTCTCTGGAATCGAACCCTGATTTCCCGTCACCCGTGGTCACCATGGTA 118114 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| |||||||| |||||| ||||||| || || | | |||||| Sbjct 118115 GGCACGGCAACTACCATC----GTTGAT-GGGCAGACTTTCAAACGGGTCGTCGCCGTGA 118169 Query 241 CAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCCCGAAG 291 || | |||||| | | ||||| | ||||||| || ||| || | Sbjct 118170 GGGGGGCGTGCGATCGGCCCGAGGTTATCTACAGTCACCAAACCCGCCGGGGCCGGGAGG 118229 Query 292 G-GC-------GTTGGTTTTTTATCTAATAAATACAC-----------CCCTTCCGAAGT 332 | || ||||| |||| |||| |||||| ||| ||| ||||| Sbjct 118230 GAGCTGACCCGGTTGG-TTTTGATCTGATAAATGCACGCATCCCCCCGCCCCCGCGAAG- 118287 Query 333 CGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA 385 ||||| | ||||||||||||||||||||||||||| |||||||| ||| | Sbjct 118288 -GGGGTCAGCGCCAGTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAATAGGA 118346 Query 386 -AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 || | | | || | ||| |||||||||||||||||||||| ||||||||||||| Sbjct 118347 GAGGAGCGAGCGACCAGAGGAACCATAACTGATTTAATGAGCCATTGGCAGTTTCACTGT 118406 Query 441 A-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 | || ||| ||||||||||| |||||||||||||||||||||| |||||| |||| Sbjct 118407 ACCAGCGGTGC--GTACTTAGACATTCATGGCTTAATCTTTGAGACAAACATATG-CTAC 118463 Query 499 TGGCAG 504 |||||| Sbjct 118464 TGGCAG 118469 >seq2 Length=37033868 Score = 168 bits (186), Expect = 2e-39 Identities = 154/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89 || ||||| | ||||| | ||||||||||||| | ||| ||| | |||||||||||| Sbjct 10649997 AGTCCTGTGTTGTTATTTTTCGTCACTACCTCCCTGGGTCAGGAGTTGGTAATTTGCGCA 10650056 Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||| ||| ||||||||| ||||||||||||| |||| |||||| ||||| Sbjct 10650057 CCTGCTGCCTTCCTGGGACGTGGTAGCCATTTCTCAGGCTCCTTCTCTGGAATCAAACCC 10650116 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC-CTACCATCGAAAGTTGAT 208 | ||||||| | | | | | |||| ||||| ||| | ||||||| |||||||||| Sbjct 10650117 TGATTCCCCATCCCTCATAGTCACCACTGTAGG-CACGGCCACTACCATTGAAAGTTGAT 10650175 Query 209 AGGGCAGAAATT 220 ||| |||| ||| Sbjct 10650176 AGGCCAGACATT 10650187 >seq56 Length=12864825 Score = 163 bits (180), Expect = 9e-38 Identities = 150/185 (81%), Gaps = 5/185 (3%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||| ||||| | || | | |||||| |||| | ||| ||||||||||||| Sbjct 7586681 ACTCATTCCAGTTACAGGGCCTCCATAGAGCCTGGTATTGTTCTTTTTTGTCACTACCTC 7586740 Query 62 CCCGTGTCGGGATTGGGTAATTTGCG-CGCCTGCTGCCTTCCTTGGATGTGGTAGCC--G 118 || | || |||| ||||||||||||| | ||||||||||||||||||||||||||| | Sbjct 7586741 CCTGGGTGGGGAATGGGTAATTTGCGCCATCTGCTGCCTTCCTTGGATGTGGTAGCCGGG 7586800 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||| | ||||| | ||| |||| ||| | |||||| | || ||| Sbjct 7586801 TTTCTCAGGCTCCCTCTTCAGAATCAACCCCCAATT-CCCATCACCCGTGGTCACTGTGG 7586859 Query 179 TAGGC 183 ||||| Sbjct 7586860 TAGGC 7586864 Score = 91.5 bits (100), Expect = 4e-16 Identities = 136/182 (75%), Gaps = 12/182 (7%) Strand=Plus/Plus Query 331 GTCGGGGTTTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGG 388 ||||| | || | ||| |||||||||||| ||||| |||| |||||||| |||| | ||| Sbjct 7587135 GTCGGCGCTTGTCAGCGTGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTAGGAGAGG 7587194 Query 389 TACTA-TCA---AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TA 443 | | | | || | | | ||||||||| ||||||| | || ||||| ||| | | Sbjct 7587195 AGCAAGTGACTGAAGGAGCCACAACTGATTTGCTGAGCCACTAGC-GTTTCGCTGCAGCA 7587253 Query 444 G-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 | ||| | || |||| |||||||||| ||||||||||||| |||| | |||||||| Sbjct 7587254 GCCGTGC--ACACCTAGATGTGCATGGCTTTATCTTTGAGACAAACATAAG-CTACTGGC 7587310 Query 503 AG 504 || Sbjct 7587311 AG 7587312 >seq21 Length=22121357 Score = 122 bits (134), Expect = 3e-25 Identities = 123/156 (79%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||| |||||||| | | | |||||| ||||| | || ||| ||||| |||| || Sbjct 8466026 ACTCATCACAATTACAGGGCATCCAAAGAGTCCTGTCTT-GTTTTT-TTGTCCCTACTTC 8465969 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| ||| ||||||||||| |||||||||| || |||||| || |||| ||| Sbjct 8465968 CCCAGGTCAGGAGTGGGTAATTTGTACGCCTGCTGCATTATTTGGATATGATAGCTATTT 8465909 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157 |||||| ||| | ||||||||| |||||| |||||| Sbjct 8465908 CTCAGGGTCCTTTTCCGGAATCAAACCCTGATTCCC 8465873 >seq328 Length=1429058 Score = 109 bits (120), Expect = 2e-21 Identities = 164/225 (73%), Gaps = 20/225 (9%) Strand=Plus/Minus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCT---TCCGAAGTCGGGGTT-------TTTAG 344 |||||||||| |||| ||||| ||| ||| || | | ||||| || || Sbjct 1172140 GTTGGTTTTT-ATCTGGTAAATGCACACCTCTCTCGGCAAAGGGGGTCAGTGCCCTTCAG 1172082 Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA--CTATCAAATAAA 402 ||||| ||||||||| | |||||| | || || |||| || | | |||| || Sbjct 1172081 CATGTGTTAGCTCTAAACTTACCA--GATAGTCAAGTAGAGGAGTGAGCAACCAAAAGAA 1172024 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG--ATTGCT-TATACTTA 458 | | || |||||||||||||||||| ||||||||||||| || | || | | || | Sbjct 1172023 CTAGAAGTGATTTAATGAGCCATTCACAGTTTCACTGTACCAGCCCTATCTATGTGCTCA 1171964 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | |||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 1171963 GCCATGCATGGCTTCATCTTTGAGACCAGCATATG-CTACTGGCA 1171920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510292232960