Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq288 161 8e-35 seq64 145 6e-30 seq187 116 3e-21 seq146 111 1e-19 seq151 86.0 5e-12 >seq288 Length=2168581 Score = 161 bits (178), Expect = 8e-35 Identities = 571/879 (65%), Gaps = 30/879 (3%) Strand=Plus/Plus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 ||||||||| || | |||||||| || || || || ||||||| || || | || Sbjct 510347 CTCCTTGGCTAGCTCACAGCTGGCTTCCAGGGCTCCATAATAAATAGTTTCAAGGATTTA 510406 Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGT 65813 | ||| | | | ||||| ||||| | || ||| | |||||||| ||| || | Sbjct 510407 TTTATTTAATAACTGGGCCTCTATACTCTCAAAAGG-ATATCTCATCAGGATAAAGGTAT 510465 Query 65814 CGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGA-ACGTCTCGCC 65872 | |||| ||||| |||||||| || ||||| | ||| | ||| || | | | ||| Sbjct 510466 CTACCAGCCCTTGTACTCCAATTCCAATGGGTCTATGGCATTTATTTGATAAATGT-GCC 510524 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCA-CATG 65931 || || ||||| |||| | ||||||||||| ||||||||| || | || | | | Sbjct 510525 TCTGGGACAGGATAGT---TTATATCGATAATTTTATTCAAATTTCG-GACAATAGCTTT 510580 Query 65932 CACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACAC 65991 || | ||||| || || || | ||| | | || || || Sbjct 510581 GGTGACTTCTGCCAATTTCTCAAAGTCGTA-TGTGT-----GTTCTGGTGTA-------- 510626 Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||| || | ||||| || || || | ||| || || || | ||| | ||| Sbjct 510627 -ACATACATATTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATTTTTGCTGGT 510685 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||| || || ||||| |||||||| || ||||| || || |||| ||||| || || Sbjct 510686 ATATTCAACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTT 510745 Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 ||||| ||||| || | ||| ||||| | ||||||| | || || | ||| || || Sbjct 510746 GCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACAGGGTACCCGGCTCTGTCTGAGA 510805 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT--ACCTTTG 66229 |||| |||||| || |||||| | || || || || | || | ||||| Sbjct 510806 CTCAGTGATGGTGTACCAAAGCTGCTGAGCTTTTACA--ACTTTGCGAACATGACCTTGT 510863 Query 66230 CGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 ||| ||| ||| || | | || || || ||||| || || ||| | ||| Sbjct 510864 TTTTCATAACTTTCATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGGCCAGGA 510923 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 |||| | |||||||| || ||||| || || ||||| || ||| || ||| Sbjct 510924 CACTCATTTGGACACAGCAAAGACCAGTCCTGATTAGTCTCTACTCGTTTCATGAAGAGA 510983 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATT 66408 | | ||||| ||||| |||| |||| | || || ||||| || | || ||| | Sbjct 510984 TTCAGAATCCAAAGGGCAAAGAAAAGATTCCTGGCACGCTGCTCTTCTTTTCCTGTGTTC 511043 Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 ||| || || || |||||||||||||| |||||| || |||||||| || || || Sbjct 511044 TTTTTTAAA-TCAAGAAACTCAAAGATGTCTAAATGCCAAGGCTCCAGGTAAATAGCAAA 511102 Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACG 66528 | || | ||| |||||||| || || || ||||| ||||| | || | Sbjct 511103 TGCCCCAGGGCACTTGTTTCCACCTTGATCAACATAACGAGCTGTGTTGTTATACACTCT 511162 Query 66529 CAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || ||| ||||| || || ||||| ||||||||||| || Sbjct 511163 CAGCATTGGTACAAGGCCATTAGAATTGCCATTGGTCCC 511201 >seq64 Length=12756018 Score = 145 bits (160), Expect = 6e-30 Identities = 225/318 (71%), Gaps = 9/318 (3%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 ||||||||| |||| || || ||| |||||||| ||| | | | ||||||||| Sbjct 2273143 TTCCCCATCCAGTACCCCGACATCTGGAAGATGTACAAGCAGGTGCAGACATCCTTCTGG 2273202 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTA--TCGAGCG 61183 |||| |||||||| ||| | || || || || | ||||| | | | || ||| Sbjct 2273203 ACGGCAGAGGAGGTTGATCTATCAAAGGATCTGCCTCACTGGCA----TAAGCTCAAGCC 2273258 Query 61184 G--TGAACAACATTTCATTAAACATGTGTTGGCGT-TCTTTGCCGCTTCGGACGGTATCG 61240 | ||| || | || ||| || || || || | | ||||| || || || || | Sbjct 2273259 GGATGAGAAATACTTTATTTCTCACGTCTTAGCCTCTTTTTGCAGCAAATGATGGAATTG 2273318 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 | ||||| || || |||| || ||| ||||||||||| || | ||||| || || | Sbjct 2273319 TAAATGAAAACTTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCT 2273378 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 |||||||||||||||| ||| |||||||| ||||| ||||||||||| | ||||| | Sbjct 2273379 TCTACGGCTTCCAGATCCTCATCGAGAATGTTCACTCAGAGATGTACAGCTTGCTCATAG 2273438 Query 61361 ATACGTACATCAGGGAGC 61378 |||| || ||||| |||| Sbjct 2273439 ATACCTATATCAGAGAGC 2273456 >seq187 Length=5094135 Score = 116 bits (128), Expect = 3e-21 Identities = 315/474 (66%), Gaps = 11/474 (2%) Strand=Plus/Minus Query 61231 GACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 || || || |||| ||||||| | |||| || || || || || ||| | | || Sbjct 5542 GATGGCATAGTCAGTGAGAATCTGGTGGAGCGATTTAACCAAGAAGTTCAAATTACAGAA 5483 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 || || ||||||||||||||||||||||||||||| || | || ||||| ||||||| Sbjct 5482 GCCCGGTGTTTCTACGGCTTCCAGATTGCCATGGAAAACCTGCATTCGGAAATGTACACA 5423 Query 61351 GTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATC 61410 | || || || || ||||| || || ||| | || | |||||||||| Sbjct 5422 CTCCTTATGGACACTTACATTAGAGATTCCCAAGAAAGGGAGTTTCTCTTCAATGCCACT 5363 Query 61411 GAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACA 61470 ||||| | | |||||| ||| || || ||||| || ||||| | ||| Sbjct 5362 GAGACCGTGGCCTGTGTGAAGAAGAAGGCAGACTGGGCGTTGCGCTGGAT--AGGGGACA 5305 Query 61471 A--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCA 61528 | ||| |||| ||| |||| | |||| |||| || || || | || || Sbjct 5304 AAGAGGCCACATATGGAGAACACACGGTGGCCTTTGTCACTGTGGAAGGAATTTTCTTTT 5245 Query 61529 GTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCT 61588 ||| || ||||| ||||| ||| | |||||||| || || ||||| || || |||| Sbjct 5244 CTGGTTCTTTTGCGTTGATCTTCTGGCTCAAGAAACGGGGCCTCATGCCTGGCCTCACCT 5185 Query 61589 TCAGCAATGAGTTGA-TATCACGCGACGAGGGCATGCATTGTGATTTTGCTGT-TTTGCT 61646 | ||| || | | || || | |||||||| ||| |||||| || | ||| || | Sbjct 5184 TTTCCAACGAACTCATTAGCA-GATACGAGGGCTTGCGTTGTGACTTCG-TGTGCCTGAT 5127 Query 61647 ATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGT 61700 ||||| | | |||||| | |||| |||| || | ||| | |||||||| Sbjct 5126 GTTCAAGC---ACCTGGTGCACAAGCCGTTGGAGCAGAGGGTGAGGGAGATTGT 5076 >seq146 Length=7541600 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 |||||| || || ||||| |||||||| || ||||| || || |||| ||||| || Sbjct 3716348 GGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTG 3716289 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 3716288 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCGGTCTG 3716229 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||||| |||||| Sbjct 3716228 AGACTCAATGATGGCGTACCAAAG 3716205 >seq151 Length=7174217 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || ||| | | || || ||||||||||||||||||||| Sbjct 1180831 TGGAGCGATTTAGC-CAAGAAGTTCAAATTACAGAAGCCCGTTGTTTCTACGGCTTCCAG 1180889 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||| ||||| || | || ||||| ||||||||| | || || || || ||||| Sbjct 1180890 ATTGCTATGGAAAACATACATTCGGAAATGTACAGTCTGCTTATTGACACTTACAT 1180945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397533428356400