Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2163 259 7e-67 seq438 174 2e-41 seq303 161 1e-37 seq3 136 6e-30 seq13 105 1e-20 seq17 93.3 6e-17 >seq2163 Length=9074 Score = 259 bits (286), Expect = 7e-67 Identities = 197/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| ||||||||||| ||| | Sbjct 4844 GTACAAAGGGCAGGGACGTAATCAACGCATGCT-GATGACATACGCTTACTAGGTATT-C 4901 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||||||||| || ||||| |||||| Sbjct 4902 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCATCACGACCAAGTTTCACAAGATT 4961 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | || | ||||||||| ||||| || | ||||||||||||||||||| Sbjct 4962 ACCCAATCTTTTCAGATAAGGTGATATACTCGCTGGCTTGGTCAGTGTAGCGCGCGTGCG 5021 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5022 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 5070 >seq438 Length=171919 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 102145 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 102202 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 102203 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 102262 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 102263 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 102322 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 102323 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 102375 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 169419 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 169476 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 169477 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 169536 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 169537 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 169596 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 169597 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 169649 Score = 159 bits (176), Expect = 5e-37 Identities = 179/234 (76%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| ||||| ||||| ||| |||||| |||||| | Sbjct 132123 GTACAAAGGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 132176 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 132177 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 132236 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 132237 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 132296 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 132297 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 132349 >seq303 Length=353077 Score = 161 bits (178), Expect = 1e-37 Identities = 180/234 (77%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 259858 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 259801 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | |||||||||| || ||||| | || Sbjct 259800 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCATGAATGGGGTTCAACGGGTT 259741 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 259740 ACCCCG-CCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 259682 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | ||||||||||||||||||| |||||||||| ||||| || ||||| Sbjct 259681 GCCCCGGACATCTAAGGGCATCACAGGCCTGTTATTG-CTCAATCTCGGGTGGC 259629 >seq3 Length=155691105 Score = 136 bits (150), Expect = 6e-30 Identities = 172/230 (75%), Gaps = 16/230 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| || |||||| |||||| | Sbjct 54338036 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGCACTTACTGGGAATT-C 54338093 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 |||||| | | || ||||||||| | ||||||||||| |||| ||||| | Sbjct 54338094 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCAC----AAATGGTGTTCAATG 54338149 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 ||||||| |||| | || ||| | || | ||| |||||||||| ||| Sbjct 54338150 GGTTACCCGTGCCTGCCAGCGTAGGGTAGGCACACACTGAGC----CAGTGTAGCGTGCG 54338205 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||| |||| | ||||||||||||||||||||||||||| || ||||| || Sbjct 54338206 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTACTG-CTCAATCT 54338254 >seq13 Length=143360832 Score = 105 bits (116), Expect = 1e-20 Identities = 169/237 (71%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||||| | | |||| | |||||| Sbjct 113018481 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCACACTTATTGAGAATTTG 113018539 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAAGA 117 ||||| | | || ||||||||| | ||||| | |||| ||||| | Sbjct 113018540 -TCGTTCATGGGGAATAATTGCAATCTCCAATCCCTGT-----TGAATGGGGTTCAACGG 113018593 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||| ||| ||| ||| | || || ||| |||| ||||||| | | Sbjct 113018594 GTTACCCGTGCCTACCGGTGTAGGGTAGGTACACGCTGAGCCAGTCAGGGTAGCGCACCT 113018653 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| |||||||||||||||||||||||||||||||| |||| ||| ||||| Sbjct 113018654 GTAGCCCTGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAGTCTTGGGTGGC 113018709 >seq17 Length=85008467 Score = 93.3 bits (102), Expect = 6e-17 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 36579752 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 36579694 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 36579693 AATCTCGGGTGGC 36579681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751976389315