Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2163 307 2e-81 seq3078 174 3e-41 seq438 174 3e-41 seq303 174 3e-41 seq40 152 9e-35 seq2952 138 2e-30 seq11 122 2e-25 seq4 120 6e-25 seq2 95.1 2e-17 seq1 91.5 3e-16 >seq2163 Length=9074 Score = 307 bits (340), Expect = 2e-81 Identities = 237/280 (85%), Gaps = 1/280 (0%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 5767 ATGCACTTTACTGGGTGTTGGAGGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 5708 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||||||| | ||| ||||||||||||||||||||||| ||||||||||| | |||| Sbjct 5707 CAAAGCAGGCTTATGCCTGAATACATTAGCATGGAATAATAAAATAGGACGTGTGATTCT 5648 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| |||||||||| ||||||| ||| ||||| | |||| Sbjct 5647 ATTTTGTTGGTTTCTAGGATTACCGTAATGATGAATAGGGTCAGTTGGGGGCATTTGTAT 5588 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | || ||||||||||||||||||||||| || ||||| ||||||||||||||| | Sbjct 5587 TACATCGTCAGAGGTGAAATTCTTGGATTGATGTAAGACAAACTACTGCGAAAGCATCTG 5528 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||| |||||| |||| ||||||| |||| ||| Sbjct 5527 CCAAGGATGACTTCATTGATCA-AGAACGAAGGTTAAGGG 5489 >seq3078 Length=5404 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 340 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 281 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 280 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 222 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 221 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 162 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 161 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 102 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 101 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 65 >seq438 Length=171919 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 170352 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 170293 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 170292 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 170234 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 170233 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 170174 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 170173 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 170114 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 170113 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 170077 Score = 167 bits (184), Expect = 4e-39 Identities = 208/278 (75%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 103076 ATGCTCTTAGCTGAGTGTCCCGCGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 103018 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 103017 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 102959 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | ||||| || Sbjct 102958 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGCATTC- 102900 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 102899 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 102840 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 102839 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 102803 Score = 165 bits (182), Expect = 1e-38 Identities = 206/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || || ||| | | | |||||||||||||||||||||||| Sbjct 133052 ATGCTCTTAGCTGAGTGTCCCTCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 132993 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 132992 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 132934 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||| ||||||| | || | | |||||||| ||||| | |||||| | Sbjct 132933 TTCTATTTTCTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 132874 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 132873 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 132814 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 132813 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 132777 >seq303 Length=353077 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 258926 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 258985 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 258986 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 259044 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 259045 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 259104 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 259105 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 259164 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 259165 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 259201 >seq40 Length=3946108 Score = 152 bits (168), Expect = 9e-35 Identities = 184/245 (75%), Gaps = 13/245 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 |||||||||||||||||||||||||| ||||||||| || | |||| || Sbjct 804812 TTTACTTTGAAAAAATTAGAGTGTTCGAAGCAGGCCCGAGCCGCCTGGATACTGCAGGTA 804871 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC----GCCGTAA 186 |||||||| ||||||||| ||||||||||||||||||||| | ||| | |||| Sbjct 804872 GGAATAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCG--- 804926 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||| ||||| | | |||| || ||||| | |||||||||||||||||| Sbjct 804927 TGATTAAGAGGGACGGCCTGGGGCATCCGTATTGCGCCGCTAGAGGTGAAATTCTTGGAC 804986 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 | ||||| || | |||||||| || ||||| |||||||||||||||| |||| Sbjct 804987 CGGTGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAAC 805045 Query 307 GAAAG 311 ||||| Sbjct 805046 GAAAG 805050 >seq2952 Length=5788 Score = 138 bits (152), Expect = 2e-30 Identities = 159/211 (75%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 232 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 173 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 172 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 114 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 113 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 54 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||||| | |||||||||||||||||| Sbjct 53 GTATTGCGCCGCTAGAGGTGAAATTCTTGGA 23 >seq11 Length=87554214 Score = 122 bits (134), Expect = 2e-25 Identities = 183/250 (73%), Gaps = 20/250 (8%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130 |||||||||||||| |||||||||||||||||||| | ||| | |||| || Sbjct 30252368 TTTACTTTGAAAAA-TTAGAGTGTTCAAAGCAGGCTGGATCTGCCTGGATACCACAGTTA 30252310 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA-ATGA 189 |||||||| ||||||||| |||||||| |||||||||||| | ||| | | |||| Sbjct 30252309 GGAATAATGGAATAGGACA-GCGGTTCTCTTTTGTTGGTTTTT-GGAGCTAAGACCATGA 30252252 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCA-ATTGTC-----AGAGGTGAAATTCTTG 243 |||| ||||| || | ||| ||| |||| |||| |||||||| ||||||| Sbjct 30252251 TTAAGAGGGACAGCCAGGG---TCA---TTCATATTGCGCCACTAGAGGTGAGATTCTTG 30252198 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 || || || || | |||||||| || |||||||| ||||||||||||| | Sbjct 30252197 GACCAGCGCAATACGGACCAGAGCGAAAGCATTTGCCAAGGATATTTTCATTAATCA-AG 30252139 Query 304 AACGAAAGTT 313 || ||||||| Sbjct 30252138 AATGAAAGTT 30252129 Score = 111 bits (122), Expect = 3e-22 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| |||||||||| |||||||||| | || | || ||||| Sbjct 1616037 GGAATAATGGAATAGGACC-GCGGTTCTATCTTGTTGGTTTTCGGAACTGAGGTCATGAT 1615979 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| |||||| | ||||| | |||||||||||||||||| Sbjct 1615978 TAAGAGGGACGCCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGC 1615919 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | |||||||| || ||||| ||||||||||||| || |||||||| Sbjct 1615918 GCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAACCA-AGAACGAAA 1615860 Query 311 GTTAGGGG 318 || || || Sbjct 1615859 GTCAGAGG 1615852 >seq4 Length=91394100 Score = 120 bits (132), Expect = 6e-25 Identities = 172/239 (72%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAA 134 || ||||||||||||||| ||||||||||||| ||| | |||| ||| |||| Sbjct 23695713 CTCTGAAAAAATTAGAGTATTCAAAGCAGGCCCGAGCTGCCTGGATACTGCAGCTGGGAA 23695654 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 |||| ||||||||| ||||||||||||||||||||| | || | | |||||||| Sbjct 23695653 TAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAG 23695595 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 ||||| | ||||| | ||||| | ||| ||||||||||||| || Sbjct 23695594 AGGGACGGCTGGGGGCATTCGTATTGCGCCGCTAGAACTGAAATTCTTGGACCGGCGCAA 23695535 Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || || | || ||| | || ||||| |||||||||||||||| |||||||| || Sbjct 23695534 GATGGACCAGAGCAAAATCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAATTT 23695477 >seq2 Length=174332312 Score = 95.1 bits (104), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| | ||||||||||||||||||| | | || | | ||||| Sbjct 134057737 GGAATAATGGAATAGGACC-GTGGTTCTATTTTGTTGGTTTTTGGAACTGAGGCCATGAT 134057795 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | ||||| || ||||| | |||||||||||||||||| Sbjct 134057796 TAAGAGGGACGGCCGGGGCATTC-GTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGC 134057854 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| || | || | ||| || ||||| |||||||||||| ||| ||| |||| Sbjct 134057855 GCAAGATGGACCAGAGCAAGAGCATTTGCCAAGAATGTTTTCATTAGTCA-AGAATGAAA 134057913 Query 311 GTT 313 ||| Sbjct 134057914 GTT 134057916 >seq1 Length=194850757 Score = 91.5 bits (100), Expect = 3e-16 Identities = 90/114 (79%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GA 118 |||||| | | | |||| ||||||||||||| ||||||||||||||||| | | | Sbjct 129526071 GGAGCCTGAAGCATTTAATTTGAAAAAATTATAGTGTTCAAAGCAGGCCGAGCCACCTGG 129526130 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTC 172 ||||| ||| || ||||| ||||||||| ||| ||||||||||||| |||| Sbjct 129526131 ATACAGCAGCTAGGTATAATGGAATAGGACCTGCCATTCTATTTTGTTGTTTTC 129526184 Score = 77.0 bits (84), Expect = 6e-12 Identities = 126/179 (70%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 ||||||| ||| |||| | |||||||||||||||||| || || | | ||||||| Sbjct 71816835 AATAATACAATGGGACCA-CAGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGATTA 71816893 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | |||||| | | |||| | || | | |||||||||||||||||| | || Sbjct 71816894 AGAGGGATGGCCAGGGGCATTCATACTGCACCCCTAGAGGTGAAATTCTTGGACTGATGC 71816953 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 |||| || | || ||||| || |||| ||||| | ||||||| ||| ||||| Sbjct 71816954 AAGATGTACCAGAGCAAAAGCATTTGCCAACAATGTTGTTGTTAATCA-AGAATGAAAG 71817011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915170338368