Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2163 444 1e-122 seq438 342 9e-92 seq647 329 6e-88 seq2 282 7e-74 seq7 251 1e-64 seq13 194 3e-47 seq17 120 5e-25 seq1 109 9e-22 seq14 107 3e-21 seq4 107 3e-21 seq18 93.3 7e-17 seq6 93.3 7e-17 seq26 89.7 9e-16 seq8 89.7 9e-16 seq81 78.8 2e-12 >seq2163 Length=9074 Score = 444 bits (492), Expect = 1e-122 Identities = 257/264 (97%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1057 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 1116 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1117 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 1176 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1177 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 1236 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||||||||||||||||||||| | ||||| | |||||||||||||||||||| Sbjct 1237 TGTGGTAACTTTTCTGGCACCTCTAGCTTTAAATTCTAAAGGACTAAAGGATCGATAGGC 1296 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||| Sbjct 1297 CACACTTTCATGGTTTGTATTCAC 1320 >seq438 Length=171919 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 79556 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 79615 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 79616 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 79675 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 79676 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 79735 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 79736 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 79795 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 79796 TAAAACCCAAAAGCTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 79849 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 161837 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 161896 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 161897 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 161956 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 161957 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 162016 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 162017 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 162076 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 162077 TAAAACCCAAAAGCTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 162130 >seq647 Length=82070 Score = 329 bits (364), Expect = 6e-88 Identities = 251/294 (85%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || | ||||||||||||||||||||||||||| Sbjct 61926 TACTGAGCAGGATTACCATGGCAACAACACATAATCAGTAGGGTAAAACTAACCTGTCTC 61867 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61866 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 61807 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61806 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 61747 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||| |||||||||||||||||||||| |||||| | | Sbjct 61746 TGAACGCTTGGCCGCCACAAGCCAGCTATCCCTGTGGTAACTTTTCTGACACCTCCTG-C 61688 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 61687 TTAAACCCAAAAGCTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 61634 >seq2 Length=174332312 Score = 282 bits (312), Expect = 7e-74 Identities = 239/293 (82%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 4990579 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 4990520 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 ||||| | |||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 4990519 ATGACAGCCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACTCTCGGTG 4990460 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||| ||||| ||||||||| | |||||||||||||||||| | ||||||| Sbjct 4990459 AATTCTGCTTTACAATGATGGGAAGAGCCAATATCGAAGGATCAAAAAGCGATGTCGCTA 4990400 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||| |||||| ||||||| |||||||||||||||||||||||||| |||||| || Sbjct 4990399 TGAACACTTGGCCACCACAAGTCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 4990340 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | | | ||||||| |||| |||||||||| |||||| Sbjct 4990339 TAAAACCCAAAAGCTCAGAAGGATCACGAGGCACTGCTTTCATGGTCTGTATT 4990287 >seq7 Length=173684459 Score = 251 bits (278), Expect = 1e-64 Identities = 154/164 (94%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 170465931 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTA 170465872 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 170465871 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 170465812 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 ||||||||||||||||||| ||||||||||||||||||||| || Sbjct 170465811 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGC 170465768 >seq13 Length=143360832 Score = 194 bits (214), Expect = 3e-47 Identities = 148/175 (85%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| Sbjct 30529332 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACATCGCT 30529391 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 30529392 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 30529451 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 30529452 TTAAAACCCAAAAGCTCAGAAGGATCGTAAGGCCCCGCTTTCACGGTCTGTATTC 30529506 >seq17 Length=85008467 Score = 120 bits (132), Expect = 5e-25 Identities = 101/123 (82%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 42542410 ATCAAAAAGCAACGTCGCTATGAACGCTTGGTCACCACAAGCCAGTTATCCCTGTTGTAA 42542469 Query 220 CTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGAT-AGGCCACACTT 278 |||||||| |||||| || | ||| | | | |||||||| | ||||| ||||| Sbjct 42542470 CTTTTCTGACACCTCCTGCTTAAAACCCAAAAGCTCAGAAGGATCGTTGAGGCCCCACTT 42542529 Query 279 TCA 281 ||| Sbjct 42542530 TCA 42542532 >seq1 Length=194850757 Score = 109 bits (120), Expect = 9e-22 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||| |||| ||||||||||||||| |||| || || |||||||||||||||||||||| Sbjct 12837913 ACATTGAAG-ATCAAAAAGCAACGTTGCTACCAATGCCTGGCTGCCACAAGCCAGTTATC 12837855 Query 210 CCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||||| || ||| Sbjct 12837854 CCTGTGGTAACTTTTCTGACATCTC 12837830 >seq14 Length=163896628 Score = 107 bits (118), Expect = 3e-21 Identities = 64/67 (96%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 40258396 TCATCAGTAGGATAAAACTAACCTGTCTCACGACAGTCTAAACCCAGCTCACGTTCCCTA 40258455 Query 91 TTAGTGG 97 ||||||| Sbjct 40258456 TTAGTGG 40258462 >seq4 Length=91394100 Score = 107 bits (118), Expect = 3e-21 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||| | ||||||||| ||| |||||||| ||| |||||| ||||||| | Sbjct 72554565 ATTAGTGGGTAAGCAATCCAACACTTGGTGAATTCTGATTCACAATGATATGAAGAGCTG 72554624 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 |||| |||||||||||| ||||| || |||||||| |||||| Sbjct 72554625 ACATGGAAGGATCAAAAGGCAACATCACTATGAACACTTGGC 72554666 >seq18 Length=69800736 Score = 93.3 bits (102), Expect = 7e-17 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||| Sbjct 57701642 TCAGCAGTAGGGTAAAACTAACCTGTCTCACAACAGTCTAATCCCAGCTCACGTTCCCTA 57701701 Query 91 TTAG 94 |||| Sbjct 57701702 TTAG 57701705 >seq6 Length=27502587 Score = 93.3 bits (102), Expect = 7e-17 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||| ||||||||||||||| | ||| ||||||||||||||| ||||||| Sbjct 4681929 TCATCAGTAGGGCAAAACTAACCTGTCTGACAACGATCTAAACCCAGCTCATGTTCCCTG 4681988 Query 91 TTAGTGGGTGAACA 104 ||| ||||||||| Sbjct 4681989 CTAGCGGGTGAACA 4682002 >seq26 Length=7969563 Score = 89.7 bits (98), Expect = 9e-16 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||||||| || ||| || |||||||||||| | ||||||||||||||| | Sbjct 3251700 GGGTGAAAAACTCAAGCCTCTGTGAATTCTGCTTCAAAGTACTAGGAAGAGCCGACACTG 3251759 Query 156 AAGGATCA-AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 |||||||| || ||| || ||| |||| ||| | |||||||| ||||| |||||||| Sbjct 3251760 AAGGATCACAATAGCTGTGTGGCTGTGAATACTTAG-TGCCACAAACCAGTAATCCCTGT 3251818 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274 | || ||||| |||| || || ||||| | || | ||||| || ||||| Sbjct 3251819 GACAA-TTTTCCTGCACATCCTGCTTCAAA-CCAAAAGGTCAGGAGGATGGAAAGGCCCT 3251876 Query 275 ACTTTCATGGTTTGTATTCA 294 |||||| || |||||||| Sbjct 3251877 GCTTTCACAGTCTGTATTCA 3251896 >seq8 Length=111795807 Score = 89.7 bits (98), Expect = 9e-16 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 ||||||||| ||||| |||||||| ||| ||||||||||| ||| ||| || || Sbjct 65559219 CTATTAGTGTGTGAATAATCCAACACTTGGTGAATTCTGCTTTACAATGGTAGAAAT-GC 65559277 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 |||||| |||||||||||| || | || |||||||| ||||||| || Sbjct 65559278 GGACATCAAAGGATCAAAAAACAGCATCACTATGAACATTTGGCTGGCA 65559326 >seq81 Length=1700645 Score = 78.8 bits (86), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 101 AACAATCCAAC-GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 || ||||||| ||||| |||||||||||| | ||||||||||||||||||| |||| Sbjct 672858 AAAAATCCAAATGCTTAGTGAATTCTGCTTCACAAAGATAGGAAGAGCCGACATCAAAGG 672917 Query 160 ATCAAAAAGCAACGTCG 176 || ||||||| |||||| Sbjct 672918 AT-AAAAAGCGACGTCG 672933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854372308896