Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2163 178 2e-42 seq3078 82.4 9e-14 seq2952 82.4 9e-14 seq438 82.4 9e-14 seq303 82.4 9e-14 seq11 77.0 4e-12 seq1 77.0 4e-12 seq40 73.4 5e-11 >seq2163 Length=9074 Score = 178 bits (196), Expect = 2e-42 Identities = 158/194 (81%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 5631 CTAGAAACCAACAAAATAGAATCACACGTCCTATTTTATTATTCCATGCTAATGTATTCA 5690 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | | Sbjct 5691 GGCATAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCTCCAA 5750 Query 126 CA-CCAATGAAG-GCATACGGGCTCACCAAGAGGTAGGGCT-GGGTAATGCAGTACTCGC 182 || ||| | ||| |||| | ||||||||||||| | || || |||||| | | Sbjct 5751 CACCCAGTAAAGTGCATTGAAGTTCACCAAGAGGTAAGCCTCCAACAAATCAGTACACAC 5810 Query 183 CGTGAGGCGGACCA 196 | |||||||||| Sbjct 5811 CAAAAGGCGGACCA 5824 >seq3078 Length=5404 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 205 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 263 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 264 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 304 >seq2952 Length=5788 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 97 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 155 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 156 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 196 >seq438 Length=171919 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 102942 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 103000 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 103001 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 103041 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 170217 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 170275 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 170276 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 170316 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/101 (78%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||| ||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 132917 AAACCAAGAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 132975 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 132976 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 133016 >seq303 Length=353077 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 259061 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 259003 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 259002 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 258962 >seq11 Length=87554214 Score = 77.0 bits (84), Expect = 4e-12 Identities = 83/107 (78%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 4 CTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATT 63 ||| | |||||||||||| || ||| ||||||||| |||||||| || |||| Sbjct 30252264 CTCCAAAAACCAACAAAAGAGAACCGCT-GTCCTATTCCATTATTCCTAACTGTGGTATC 30252322 Query 64 CGGGCGTA---AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||| | ||||||||||||||||||||||||| |||| ||||| Sbjct 30252323 CAGGCAGATCCAGCCTGCTTTGAACACTCTAATTTT-TCAAAGTAAA 30252368 >seq1 Length=194850757 Score = 77.0 bits (84), Expect = 4e-12 Identities = 78/101 (77%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 9 GAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGC 68 |||| ||||||||||| ||| ||||||||| ||||| || ||| ||||| | || Sbjct 129526184 GAAAACAACAAAATAGAATGGCAGGTCCTATTCCATTATACCTAGCTGCTGTATCCAGGT 129526125 Query 69 G--TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | | |||||||||||||||| ||||||| |||| |||| Sbjct 129526124 GGCTCGGCCTGCTTTGAACACTATAATTTTTTCAAATTAAA 129526084 >seq40 Length=3946108 Score = 73.4 bits (80), Expect = 5e-11 Identities = 78/101 (77%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| || |||| | |||| Sbjct 804911 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTACCTGCAGTATCCAGGCG 804853 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||| ||||||||||||||| |||| ||||| Sbjct 804852 GCTCGGGCCTGCTTCGAACACTCTAATTTTTTCAAAGTAAA 804812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595181312394