Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2163 214 2e-53 seq3078 96.9 4e-18 seq2952 96.9 4e-18 seq438 96.9 4e-18 seq303 96.9 4e-18 seq40 86.0 6e-15 seq1 77.0 3e-12 seq11 75.2 1e-11 seq4 75.2 1e-11 >seq2163 Length=9074 Score = 214 bits (236), Expect = 2e-53 Identities = 162/190 (85%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||| Sbjct 5744 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTATGCCTGAATA 5685 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||| ||||||||||| | ||||||||||| ||||||||||| Sbjct 5684 CATTAGCATGGAATAATAAAATAGGACGTGTGATTCTATTTTGTTGGTTTCTAGGA-TTA 5626 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| || ||| ||||| | ||||| || |||| ||||||||||| Sbjct 5625 CCGTAATGATGAATAGGGTCAGTTGGGGGCATTTGTATTACATCGTCAGAGGTGAAATTC 5566 Query 181 TTGGATTTAT 190 ||||||| || Sbjct 5565 TTGGATTGAT 5556 >seq3078 Length=5404 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 304 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 245 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 244 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 187 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 186 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 131 >seq2952 Length=5788 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 196 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 137 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 136 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 79 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 78 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 23 >seq438 Length=171919 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 170316 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 170257 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 170256 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 170199 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 170198 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 170143 Score = 93.3 bits (102), Expect = 4e-17 Identities = 129/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 103041 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 102982 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 102981 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 102924 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | ||||| || ||||| | | |||||||||||||||| Sbjct 102923 TTAAGAGGGACGGCCGGGGCATTC-GTATTGCGCCGCTAGAGGTGAAATTCTTGGA 102869 Score = 93.3 bits (102), Expect = 4e-17 Identities = 128/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 133016 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 132957 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||| | ||||| | ||| | | |||| Sbjct 132956 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTCTTGGTTT-TCGGAACTGAGGCCATGA 132899 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 132898 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 132843 >seq303 Length=353077 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 258962 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 259021 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 259022 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 259079 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 259080 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 259135 >seq40 Length=3946108 Score = 86.0 bits (94), Expect = 6e-15 Identities = 129/179 (72%), Gaps = 11/179 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||| ||||||||| || | |||| | Sbjct 804812 TTTACTTTGAAAAAATTAGAGTGTTCGAAGCAGGCCCGAGCCGCCTGGATACTGCAGGTA 804871 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC---GCCCGTAA 126 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | ||| Sbjct 804872 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCG--- 804926 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | | |||| || ||||| | | |||||||||||||||| Sbjct 804927 TGATTAAGAGGGACGGCCTGGGGCATCCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 804985 >seq1 Length=194850757 Score = 77.0 bits (84), Expect = 3e-12 Identities = 78/101 (77%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC--GAATACATTACCATG 70 |||| ||||||||||||| || |||||||||||||| | | | ||||| | | | Sbjct 129526084 TTTAATTTGAAAAAATTATAGTGTTCAAAGCAGGCCGAGCCACCTGGATACAGCAGCTAG 129526143 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTC 111 | ||||| ||||||||| ||| ||||||||||| | |||| Sbjct 129526144 GTATAATGGAATAGGACCTGCCATTCTATTTTGTTGTTTTC 129526184 >seq11 Length=87554214 Score = 75.2 bits (82), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTACCAT 69 |||||||||||||| |||||| ||||||||||||| | ||| | |||| | Sbjct 30252368 TTTACTTTGAAAAA-TTAGAGTGTTCAAAGCAGGCTGGATCTGCCTGGATACCACAGTTA 30252310 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| ||||||||| |||||||| |||||| ||||| Sbjct 30252309 GGAATAATGGAATAGGAC-AGCGGTTCTCTTTTGTTGGTTT 30252270 >seq4 Length=91394100 Score = 75.2 bits (82), Expect = 1e-11 Identities = 76/97 (78%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 17 CTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCATGGAA 73 || |||||||||||||| ||||||||||||| ||| | |||| | | |||| Sbjct 23695713 CTCTGAAAAAATTAGAGTATTCAAAGCAGGCCCGAGCTGCCTGGATACTGCAGCTGGGAA 23695654 Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||| ||||||||| ||||||||||||||| ||||| Sbjct 23695653 TAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT 23695618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511983924640