Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2163 361 1e-97 seq438 197 3e-48 seq303 190 4e-46 seq3 150 3e-34 seq13 127 4e-27 seq18 102 2e-19 seq17 100 5e-19 >seq2163 Length=9074 Score = 361 bits (400), Expect = 1e-97 Identities = 267/310 (86%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||||||||| | || ||| ||| || || | |||||||| Sbjct 5154 GAACGAGACCTTCTCCTGCTAAATAGTCCAGCTGGCTACGGCTGGCTGCTGACTTCTTAG 5095 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||||||| | | || |||||||||| |||||||||||||||||||||||||||| Sbjct 5094 AGGGACTATCAACGTTTAGTTGATGGAAGTTGGAGGCAATAACAGGTCTGTGATGCCCTT 5035 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| | Sbjct 5034 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCAAGCCAGCGAGTATATCACCTTATCT 4975 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | || | ||||||||||||| ||||| |||||| |||||||||||||||||||||||| Sbjct 4974 GAAAAGATTGGGTAATCTTGTGAAACTTGGTCGTGATGGGGATAGAGCATTGCAATTATT 4915 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 4914 GCTCTTCAACGAGGAATACCTAGTAAGCGTATGTCATCAGCATGCGTTGATTACGTCCCT 4855 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 4854 GCCCTTTGTA 4845 >seq438 Length=171919 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 102401 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 102344 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 102343 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 102284 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 102283 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 102224 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 102223 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 102164 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 102163 AAGTCCCTGCCCTTTGTA 102146 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 169675 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 169618 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 169617 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 169558 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 169557 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 169498 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 169497 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 169438 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 169437 AAGTCCCTGCCCTTTGTA 169420 Score = 179 bits (198), Expect = 7e-43 Identities = 197/258 (76%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 132375 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 132318 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 132317 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 132258 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 132257 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 132198 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||| || Sbjct 132197 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCG----TT 132142 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 132141 AAGTCCCTGCCCTTTGTA 132124 >seq303 Length=353077 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||| ||||| Sbjct 259603 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGCCTGTG 259660 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 259661 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 259720 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| | |||||| | | || | | || || ||||||| | | |||| Sbjct 259721 CCTACGCCGGCAGG-CGGGGTAACCCGTTGAACCCCATTCATGATGGGGATCGGGGATTG 259779 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 259780 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 259839 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 259840 AAGTCCCTGCCCTTTGTA 259857 >seq3 Length=155691105 Score = 150 bits (166), Expect = 3e-34 Identities = 191/259 (74%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | ||| ||| || | || ||||| || |||||||||||| Sbjct 54338288 CTTCTTAGAGGGACAAGTGGCGTTCA--CCCACCCGAGATTGAG-CAGTAACAGGTCTGT 54338232 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| |||||| |||||||||| | || | || | | Sbjct 54338231 GATGCCCTTAGATGTCCGGGGCTGCACGCACGCTACACTGGCTCAGT----GTGTGCCTA 54338176 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| || || ||| |||||| | | || | | ||| ||||||| | | ||| Sbjct 54338175 CCCTACGCTGGCAGGCACGGGTAACCCATTGAACACCATTTGTGATGGGGATCGGGGATT 54338116 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| || ||||| ||| || ||||| Sbjct 54338115 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTTGCATTGAT 54338056 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 54338055 TAAGTCCCTGCCCTTTGTA 54338037 >seq13 Length=143360832 Score = 127 bits (140), Expect = 4e-27 Identities = 187/258 (72%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||| |||| | ||| | |||| | ||| |||| |||||||||||||||| Sbjct 113018735 CTTCTTAGAAGGACAAATGGCGTTCAGCC-ACCCAAGACTGAG-CAATAACAGGTCTGTG 113018678 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| |||| || | ||||||| ||||| | || || || | | Sbjct 113018677 ATGCCCTTAGATGTTCAGGGCTACAGGTGCGCTACCCTGACTGGCTCAGCGTGTACCTAC 113018618 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | ||| ||| | | | ||| | ||| |||| Sbjct 113018617 CCTACACCGGTAGGCACGGGTAA-CCCGTTGAACCCCATTCAACAGGGATTGGAG-ATTG 113018560 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||||| ||| | | |||| | | ||||| ||| | ||||||| Sbjct 113018559 CAATTATTCCCCATGAACGACAAATTCTCAATAAGTGTGGGTCATAAGCTTGTGTTGATT 113018500 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 113018499 AAGTCCCTGCCCTTTGTA 113018482 >seq18 Length=69800736 Score = 102 bits (112), Expect = 2e-19 Identities = 160/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||| |||||||| | ||| | |||| || | ||||| ||| ||||||||||| Sbjct 41291047 CTTCTCAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAACGACAGGTCTGTG 41291104 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||| |||||| | |||| ||| |||||| || ||||| | || || || | Sbjct 41291105 ATGCCCCCAGATGTCCGGGGCTGCATGCGCGCCACGCTGACTGGCTCAGCGTGTGCCCAC 41291164 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| ||| || | | || | | ||||| ||||||| | | |||| Sbjct 41291165 CCCACGCCGGCAGGCGCGGGCAACCCGCTGAACCCCATTCGTGATGGGGATCGGGGATTG 41291224 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295 ||| |||| | | | |||||||||| || |||||| ||| ||||| Sbjct 41291225 CAACTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCAT 41291269 >seq17 Length=85008467 Score = 100 bits (110), Expect = 5e-19 Identities = 85/101 (84%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 36579655 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 36579712 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||| | |||| ||||||||||||||||||| Sbjct 36579713 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAC 36579753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947169301248