Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq1 96.9 3e-15 seq119 86.0 5e-12 >seq3 Length=155691105 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| |||||||| || ||| |||||| Sbjct 117745885 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTCCAAATCCTCATTGAGAAT 117745826 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 |||||||| |||||||||||| | || || || || |||||||| || Sbjct 117745825 GTCCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 117745779 >seq1 Length=194850757 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 ||||| || || | ||| |||||||| || ||||| ||||| || | ||||| || Sbjct 145039671 GTATATTCTACTACTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCAAGGTTCTGCTGG 145039612 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| ||||| || | ||| ||||| | |||||| || || || ||||| || Sbjct 145039611 TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTAAGGGGTACCTGTCTCTGTCTGA 145039552 Query 66170 GACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 145039551 GACTCAATGATGGCATACCAAAG 145039529 >seq119 Length=1067461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||||| || | | || || || ||||||||||||||||| | Sbjct 28311 TGGAGCGGTTCAGCCAGGAGGTTCAGATCACTGAAGCCCGCTGTTTCTACGGCTTCCAAA 28370 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | |||||||| || | ||||| ||||||||||| | || || || |||||||| Sbjct 28371 TCGCCATGGAAAACATACACTCCGAGATGTACAGCCTCCTGATTGACACGTACAT 28425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552296188240