Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq1092 279 8e-73
seq24850 174 2e-41
seq46 165 1e-38
seq705 156 6e-36
seq193 89.7 8e-16
seq68 84.2 3e-14
seq2223 75.2 2e-11
>seq1092
Length=135615
Score = 279 bits (308), Expect = 8e-73
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||||| ||| ||||||||||||| |
Sbjct 133220 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTAGGAATT-C 133163
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||| ||||| |||||||||| ||||| | | ||||| ||||||
Sbjct 133162 CTCGTTGAAGAGCAATAATTACAATGCTCTATCCCCAGCACGACGGAGTTTCACAAGATT 133103
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||||| ||||||||||| |||||||| || | | |||||||||||||||||||
Sbjct 133102 ACCAAGACCTCTCGGCCAAGGT--TAGACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 133045
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 133044 GCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 132996
>seq24850
Length=564
Score = 174 bits (192), Expect = 2e-41
Identities = 182/234 (78%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| |
Sbjct 301 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 358
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 359 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 418
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||| |||| ||| | || || ||| ||||||||||||||||||
Sbjct 419 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 478
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 479 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 531
>seq46
Length=9635315
Score = 165 bits (182), Expect = 1e-38
Identities = 180/234 (77%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||| | ||||| | | |||||| |||||| |
Sbjct 1393042 GTACAAAGGGCAGGGACTTAATCAACGCAAGCGT-ATGACCCACACTTACTGGGAATT-C 1392985
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 1392984 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 1392925
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||||| |||| ||| | || | ||| ||||||||||||||||||
Sbjct 1392924 ACCCGCACCTGCCGGCGTAGGGTAGGCACATGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 1392865
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1392864 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1392812
>seq705
Length=2403095
Score = 156 bits (172), Expect = 6e-36
Identities = 178/234 (76%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||| | ||||| ||||| ||| |||||| |||||| |
Sbjct 1147258 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCGCACTTACTGGGAATT-C 1147201
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | || ||||||||| | |||||||||| || ||||| | ||
Sbjct 1147200 CTCGTTCATAGGGAATAATTGCAATCCCCGATCCCCATCATGAATGGGGTTCAACGGGTT 1147141
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||| |||| ||| | || || ||| ||||| ||||||||||||
Sbjct 1147140 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTATAGCGCGCGTGCA 1147081
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1147080 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1147028
>seq193
Length=6558526
Score = 89.7 bits (98), Expect = 8e-16
Identities = 118/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132
|| ||||||||| | || |||||||||| ||||| | |||||| ||||
Sbjct 6478875 AATAATTGCAATCCCCAATACCCATCACGAATGGGGTTCAATGGGTTACCCCCGCCTGCT 6478816
Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192
||| |||| | || || ||| |||||||||| || |||| |||| | ||||||
Sbjct 6478815 GGCATAGGTTAGGCACACGCTGAGCCAGTCAGTGTAGCACGGGTGCAGCCCCGGACATCT 6478756
Query 193 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||||||||||||||||||||||| ||||| || |||||
Sbjct 6478755 AAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 6478716
>seq68
Length=4653400
Score = 84.2 bits (92), Expect = 3e-14
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||| || ||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 3134775 TCAGTGTAGCATGCATGCATCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 3134717
Query 221 AAACTTCCGTGGC 233
|| || | |||||
Sbjct 3134716 AATCTCCGGTGGC 3134704
>seq2223
Length=206746
Score = 75.2 bits (82), Expect = 2e-11
Identities = 61/73 (84%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
||||||||| | |||||| |||| | |||||||||||||||| |||||| |||||| |||
Sbjct 87090 TCAGTGTAGTGTGCGTGCAGCCCTGGACATCTAAGGGCATCATAGACCTTTTATTG-CTC 87148
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 87149 AATCTCAGGTGGC 87161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751774740515
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |