Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq1092 379 4e-103
seq29 91.5 3e-16
>seq1092
Length=135615
Score = 379 bits (420), Expect = 4e-103
Identities = 270/305 (89%), Gaps = 6/305 (2%)
Strand=Plus/Plus
Query 15 GGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTT 74
|||||||||||||||| | || | |||| ||| | | || || |||||||||
Sbjct 132276 GGGCCTTTCCTTCTGGCTAACCTTGAGTCCTTG--TGGCTCTT--GGCGAACCAGGACTT 132331
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGA 133
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 132332 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGAATATATTAGCATGGA 132391
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 132392 ATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACCATCGTAATGATTAA 132451
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 132452 TAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 132511
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||
Sbjct 132512 AGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCA-AGAACGAAAGTT 132570
Query 314 AGGGG 318
|||||
Sbjct 132571 AGGGG 132575
>seq29
Length=12481696
Score = 91.5 bits (100), Expect = 3e-16
Identities = 126/174 (72%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199
||||||||| || ||||||||||||||||| | || | | |||||||| |||||
Sbjct 11252833 GAATAGGACC-GCTTTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGA 11252891
Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259
| |||||| | ||||| | |||||||||||||||||| | |||||
Sbjct 11252892 CGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACTGGCACAAGACAG 11252951
Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|| | || ||| | || ||||| |||||||||||||||| ||| |||||||
Sbjct 11252952 ACCAGAGCAAAAACATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTT 11253004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914917011008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |