Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1092 650 0.0 seq182 136 2e-29 seq22279 131 7e-28 seq189 131 7e-28 seq640 118 4e-24 seq50 111 7e-22 seq41 109 2e-21 seq705 105 3e-20 seq569 102 3e-19 seq194 102 3e-19 seq278 96.9 1e-17 seq89 96.9 1e-17 seq895 87.8 7e-15 seq443 86.0 3e-14 seq29 78.8 4e-12 >seq1092 Length=135615 Score = 650 bits (720), Expect = 0.0 Identities = 552/670 (82%), Gaps = 15/670 (2%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||| Sbjct 134389 TGTAAAGTGCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAAT 134448 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 134449 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 134508 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 134509 TGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCAT 134568 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCG--GTGCACTCTTCTGCG 260 | ||||| || ||| | | || ||| | | | | | ||| | Sbjct 134569 TTGATCAGACATGGTGTTTTGTGCCCT--CTGCTCCTTGTGGGTAGGGGAATCT-CGCAT 134625 Query 261 GTCA---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317 ||| |||||||||||| | || || ||||||| || ||||||| || | | Sbjct 134626 TTCACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAT-CCATAGGAATGTAGCTTGCCT 134684 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCC 375 ||| || |||||||| | || |||| | ||| || ||||||||| | ||| | Sbjct 134685 CGGTAAGTATTATAGCCTGTGG--GAATACTGCCAGCTGGGACTGAGGACTGCGACGTAA 134742 Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435 | | ||||||||||| |||||||| || || |||||||||| |||||||||||||||||| Sbjct 134743 GTCAAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTC 134802 Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495 |||| ||||||||||||||||||||| |||||| | ||||||||||||||||||| |||| Sbjct 134803 TAACGTCTATGCGAGTGTTTGGGTGTAAAACCCATACGCGTAATGAAAGTGAACGTAGGT 134862 Query 496 GGGAACC-CGTGAG-GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 553 || || || || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 134863 TGGGGCCTCGCAAGAGGTGCACAATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 134922 Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 134923 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGA 134982 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| Sbjct 134983 GGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGT 135042 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 135043 ATAGGGGCGA 135052 >seq182 Length=5800765 Score = 136 bits (150), Expect = 2e-29 Identities = 102/120 (85%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| ||||||||||||||| |||||| |||| |||||||||||||||||| Sbjct 108069 TGTTAGGACCTGAAAGATGGTGAACTGTGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 108010 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 108009 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 107950 >seq22279 Length=802 Score = 131 bits (144), Expect = 7e-28 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 342 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 401 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||| ||||| | ||||| Sbjct 402 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGGTCGTCCGACCTGGGT 461 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 462 ATAGGGGCGA 471 >seq189 Length=5389248 Score = 131 bits (144), Expect = 7e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 960988 GTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 960929 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| | ||| || ||| | ||||||| | ||||| || ||||||||||||| Sbjct 960928 TGGAGGTCCATAGCTGTCCTGACATGCAAATTGGTCGTCCAACCTGGGTATAGGGGC 960872 >seq640 Length=383956 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 75997 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 76056 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 76057 ACCGGCACGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 76116 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 76117 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 76156 >seq50 Length=9356277 Score = 111 bits (122), Expect = 7e-22 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||| |||||||||||||||||||| |||| ||||||||||||||| ||| Sbjct 6955308 TGTTAGGACCCGGAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACCCTG 6955249 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||||| | |||||| ||| | |||||||| || || | ||||||| ||| Sbjct 6955248 GTGGAGGTCCATAGCGGTCCTGACATGCAAATCAGTCATCTGACCTGGGTATGGGG 6955193 >seq41 Length=14381852 Score = 109 bits (120), Expect = 2e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||| ||||||| |||| |||||||||||||||||||||||||| || |||||| | Sbjct 9981284 TGAAAGATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCC 9981343 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||| ||||| | ||||||||||||||| Sbjct 9981344 TGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 9981383 >seq705 Length=2403095 Score = 105 bits (116), Expect = 3e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||||||||||||| |||| |||||| |||| |||||||||||||||| ||| Sbjct 581543 TTAGGACCCGAAAGATGGTCAACTGTGCCTGGGCAGGGCAAAGCCAGAGGAAACTCGGGT 581602 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | |||||| ||| | | ||||| | || || | ||||||||||||||| Sbjct 581603 GGAGGTCCATAGCGGTCCTGACATTCAAATTGGTCATCCGACCTGGGTATAGGGGCGA 581660 >seq569 Length=1827878 Score = 102 bits (112), Expect = 3e-19 Identities = 92/115 (80%), Gaps = 7/115 (6%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||| || || |||| ||||||||||||||||||||||| Sbjct 331617 GGACCCGAAAGATGGTGAGCTG-GC------AGGGCAAAGCCAGAGGAAACTCTGGTGGA 331669 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| | |||||| ||| ||||||||| ||||| || |||||||||||| || Sbjct 331670 GGCCCATAGCGGTCCTGATGTGCAAATCAGTCGTCCAACCTGGGTATAGGGGTGA 331724 >seq194 Length=1962380 Score = 102 bits (112), Expect = 3e-19 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| |||||||| |||| || |||| |||||||| | ||||| ||||||| Sbjct 673443 GAGTCAGGTTGCTTGGGAATACAGCCAAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 673384 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| |||||| | | | |||| ||||||| |||||| | Sbjct 673383 ACCAGCACGAGACCGATAGTCAACAAGT--AATAAGAGAAAATTGAAAAGAACTTTGAAG 673326 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| ||||| ||||||| Sbjct 673325 AGAGAGTTCAAAAGGGCGTGAAA 673303 >seq278 Length=1728189 Score = 96.9 bits (106), Expect = 1e-17 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||||||||||||||||||||||||| |||| |||||||||| | ||||| | Sbjct 509130 TTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGTAGCTCTGAT 509189 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||| || |||| | ||| | ||||||| | || || | || |||| ||||| Sbjct 509190 GGAGGTTCATAGCGATCCTGACATGCAAATTGGTCATCCGACCTGAGTATCGGGGC 509245 >seq89 Length=8775216 Score = 96.9 bits (106), Expect = 1e-17 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||||||| ||||||||||||||||| |||| ||||||||||||||||| || Sbjct 1912842 TTAGGACCCGAAAAATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTAGT 1912901 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| | || |||| | || ||||||||| || || || || ||| |||||| Sbjct 1912902 GGAAGTTCTTAGCGTTCTTGATGTGCAAATCAGTCATCCAACCTGAGTAGAGGGGC 1912957 >seq895 Length=1142531 Score = 87.8 bits (96), Expect = 7e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||||||||||||||||||||||| || |||||| ||| |||||||||| || || Sbjct 314990 AAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCAGTCATCCG 315049 Query 666 ATTTGGGTATAGGGGCGA 683 | ||||||||||||||| Sbjct 315050 ACCTGGGTATAGGGGCGA 315067 >seq443 Length=965523 Score = 86.0 bits (94), Expect = 3e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 476563 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 476504 Query 624 GTGGA 628 ||||| Sbjct 476503 GTGGA 476499 >seq29 Length=12481696 Score = 78.8 bits (86), Expect = 4e-12 Identities = 79/103 (77%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||||||||||||||||| | || ||||||||||||| |||||| |||| || Sbjct 2531133 AGATGGTGAACTATGCCTGGGAAAGGCAAAGCCAGAGGAAATTCTGGTAGAGGTCTATAG 2531074 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 | || || ||||||||| || || || |||||||||||| Sbjct 2531073 CAGTCGTGATGTGCAAATCAGTCCTCCAACCTGGGTATAGGGG 2531031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079336744550