Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq1092 650 0.0
seq182 136 2e-29
seq22279 131 7e-28
seq189 131 7e-28
seq640 118 4e-24
seq50 111 7e-22
seq41 109 2e-21
seq705 105 3e-20
seq569 102 3e-19
seq194 102 3e-19
seq278 96.9 1e-17
seq89 96.9 1e-17
seq895 87.8 7e-15
seq443 86.0 3e-14
seq29 78.8 4e-12
>seq1092
Length=135615
Score = 650 bits (720), Expect = 0.0
Identities = 552/670 (82%), Gaps = 15/670 (2%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| ||| ||||||| |||||||||||||||||||||||||||||| |||| |||||||
Sbjct 134389 TGTAAAGTGCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAAT 134448
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
| | ||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||
Sbjct 134449 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 134508
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || |
Sbjct 134509 TGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCAT 134568
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCG--GTGCACTCTTCTGCG 260
| ||||| || ||| | | || ||| | | | | | ||| |
Sbjct 134569 TTGATCAGACATGGTGTTTTGTGCCCT--CTGCTCCTTGTGGGTAGGGGAATCT-CGCAT 134625
Query 261 GTCA---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317
||| |||||||||||| | || || ||||||| || ||||||| || | |
Sbjct 134626 TTCACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAT-CCATAGGAATGTAGCTTGCCT 134684
Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCC 375
||| || |||||||| | || |||| | ||| || ||||||||| | ||| |
Sbjct 134685 CGGTAAGTATTATAGCCTGTGG--GAATACTGCCAGCTGGGACTGAGGACTGCGACGTAA 134742
Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435
| | ||||||||||| |||||||| || || |||||||||| ||||||||||||||||||
Sbjct 134743 GTCAAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTC 134802
Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495
|||| ||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||
Sbjct 134803 TAACGTCTATGCGAGTGTTTGGGTGTAAAACCCATACGCGTAATGAAAGTGAACGTAGGT 134862
Query 496 GGGAACC-CGTGAG-GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 553
|| || || || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 134863 TGGGGCCTCGCAAGAGGTGCACAATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 134922
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 134923 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGA 134982
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 134983 GGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGT 135042
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 135043 ATAGGGGCGA 135052
>seq182
Length=5800765
Score = 136 bits (150), Expect = 2e-29
Identities = 102/120 (85%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||| ||||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct 108069 TGTTAGGACCTGAAAGATGGTGAACTGTGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 108010
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 108009 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 107950
>seq22279
Length=802
Score = 131 bits (144), Expect = 7e-28
Identities = 107/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 342 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 401
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
|||||| ||| |||||| || |||| ||||| ||||||||||| ||||| | |||||
Sbjct 402 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGGTCGTCCGACCTGGGT 461
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 462 ATAGGGGCGA 471
>seq189
Length=5389248
Score = 131 bits (144), Expect = 7e-28
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624
||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 960988 GTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 960929
Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||||| | ||| || ||| | ||||||| | ||||| || |||||||||||||
Sbjct 960928 TGGAGGTCCATAGCTGTCCTGACATGCAAATTGGTCGTCCAACCTGGGTATAGGGGC 960872
>seq640
Length=383956
Score = 118 bits (130), Expect = 4e-24
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 75997 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 76056
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| |
Sbjct 76057 ACCGGCACGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 76116
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| ||| | ||| || ||
Sbjct 76117 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 76156
>seq50
Length=9356277
Score = 111 bits (122), Expect = 7e-22
Identities = 94/116 (81%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||||| |||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 6955308 TGTTAGGACCCGGAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACCCTG 6955249
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
||||||| | |||||| ||| | |||||||| || || | ||||||| |||
Sbjct 6955248 GTGGAGGTCCATAGCGGTCCTGACATGCAAATCAGTCATCTGACCTGGGTATGGGG 6955193
>seq41
Length=14381852
Score = 109 bits (120), Expect = 2e-21
Identities = 84/100 (84%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643
|||| ||||||| |||| |||||||||||||||||||||||||| || |||||| |
Sbjct 9981284 TGAAAGATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCC 9981343
Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||||||||||| ||||| | |||||||||||||||
Sbjct 9981344 TGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 9981383
>seq705
Length=2403095
Score = 105 bits (116), Expect = 3e-20
Identities = 94/118 (80%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|| |||||||||||||||| |||| |||||| |||| |||||||||||||||| |||
Sbjct 581543 TTAGGACCCGAAAGATGGTCAACTGTGCCTGGGCAGGGCAAAGCCAGAGGAAACTCGGGT 581602
Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||| | |||||| ||| | | ||||| | || || | |||||||||||||||
Sbjct 581603 GGAGGTCCATAGCGGTCCTGACATTCAAATTGGTCATCCGACCTGGGTATAGGGGCGA 581660
>seq569
Length=1827878
Score = 102 bits (112), Expect = 3e-19
Identities = 92/115 (80%), Gaps = 7/115 (6%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||| || || |||| |||||||||||||||||||||||
Sbjct 331617 GGACCCGAAAGATGGTGAGCTG-GC------AGGGCAAAGCCAGAGGAAACTCTGGTGGA 331669
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| | |||||| ||| ||||||||| ||||| || |||||||||||| ||
Sbjct 331670 GGCCCATAGCGGTCCTGATGTGCAAATCAGTCGTCCAACCTGGGTATAGGGGTGA 331724
>seq194
Length=1962380
Score = 102 bits (112), Expect = 3e-19
Identities = 109/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| |||||||| |||| || |||| |||||||| | ||||| |||||||
Sbjct 673443 GAGTCAGGTTGCTTGGGAATACAGCCAAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 673384
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || ||||||||||| |||||| | | | |||| ||||||| |||||| |
Sbjct 673383 ACCAGCACGAGACCGATAGTCAACAAGT--AATAAGAGAAAATTGAAAAGAACTTTGAAG 673326
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
|||||||| ||||| |||||||
Sbjct 673325 AGAGAGTTCAAAAGGGCGTGAAA 673303
>seq278
Length=1728189
Score = 96.9 bits (106), Expect = 1e-17
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|| |||||||||||||||||||||||||||| |||| |||||||||| | ||||| |
Sbjct 509130 TTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGTAGCTCTGAT 509189
Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||||| || |||| | ||| | ||||||| | || || | || |||| |||||
Sbjct 509190 GGAGGTTCATAGCGATCCTGACATGCAAATTGGTCATCCGACCTGAGTATCGGGGC 509245
>seq89
Length=8775216
Score = 96.9 bits (106), Expect = 1e-17
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|| |||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 1912842 TTAGGACCCGAAAAATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTAGT 1912901
Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| | || |||| | || ||||||||| || || || || ||| ||||||
Sbjct 1912902 GGAAGTTCTTAGCGTTCTTGATGTGCAAATCAGTCATCCAACCTGAGTAGAGGGGC 1912957
>seq895
Length=1142531
Score = 87.8 bits (96), Expect = 7e-15
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665
||||||||||||||||||||||||| || |||||| ||| |||||||||| || ||
Sbjct 314990 AAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCAGTCATCCG 315049
Query 666 ATTTGGGTATAGGGGCGA 683
| |||||||||||||||
Sbjct 315050 ACCTGGGTATAGGGGCGA 315067
>seq443
Length=965523
Score = 86.0 bits (94), Expect = 3e-14
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 476563 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 476504
Query 624 GTGGA 628
|||||
Sbjct 476503 GTGGA 476499
>seq29
Length=12481696
Score = 78.8 bits (86), Expect = 4e-12
Identities = 79/103 (77%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637
||||||||||||||||||| | || ||||||||||||| |||||| |||| ||
Sbjct 2531133 AGATGGTGAACTATGCCTGGGAAAGGCAAAGCCAGAGGAAATTCTGGTAGAGGTCTATAG 2531074
Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680
| || || ||||||||| || || || ||||||||||||
Sbjct 2531073 CAGTCGTGATGTGCAAATCAGTCCTCCAACCTGGGTATAGGGG 2531031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079336744550
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