Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1092 325 6e-87
seq705 188 1e-45
seq46 154 2e-35
seq193 140 5e-31
seq24850 116 6e-24
seq617 111 3e-22
seq2223 98.7 2e-18
seq68 98.7 2e-18
seq96 75.2 2e-11
>seq1092
Length=135615
Score = 325 bits (360), Expect = 6e-87
Identities = 230/260 (88%), Gaps = 6/260 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 133077 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 133018
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---A 118
|||||||||||||||||||||||| |||| ||| || ||||||||||||||||| |
Sbjct 133017 CCTGTTATTGCCTCAAACTTCCATCGGCTTGAAACCGATAGTCCCTCTAAGAAGTGGATA 132958
Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
||| ||| || | | |||||||| |||||||||||||||||||||||| |||
Sbjct 132957 ACCAGCAA--ATGCTAGCACCA-CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAAT 132901
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 132900 TAAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAA 132841
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||||||||||
Sbjct 132840 GAAAGAGCTCTCAATCTGTC 132821
>seq705
Length=2403095
Score = 188 bits (208), Expect = 1e-45
Identities = 174/215 (81%), Gaps = 9/215 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 1147100 GTCAGTATAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 1147042
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | |||||||||||||| | | || ||| |
Sbjct 1147041 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGCACGCCGACCGCT 1146983
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 1146982 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 1146923
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCA 222
||||| |||||||||||||||||||||||||||||
Sbjct 1146922 AAATCGCTCCACCAACTAAGAACGGCCATGCACCA 1146888
>seq46
Length=9635315
Score = 154 bits (170), Expect = 2e-35
Identities = 155/196 (79%), Gaps = 9/196 (5%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 1392884 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 1392826
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACC-AT 130
||| | || |||||| | |||| | ||||||||||||| | | | || ||| |
Sbjct 1392825 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACTCCGACCGCT 1392767
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||||||||| ||||||||||||||
Sbjct 1392766 TGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATTGGAATTAACCAGAC 1392707
Query 188 AAATCACTCCACCAAC 203
||||| ||||||||||
Sbjct 1392706 AAATCGCTCCACCAAC 1392691
>seq193
Length=6558526
Score = 140 bits (154), Expect = 5e-31
Identities = 157/206 (76%), Gaps = 17/206 (8%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| || |||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 6478788 GTCAGTGTAGCACGGGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 6478730
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCATA 131
||| | || |||||| | |||| | ||||||||||||| | | || |||
Sbjct 6478729 CAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCCGACC--G 6478673
Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183
||| |||| ||| |||||| | | |||||||| ||||| ||||||||||
Sbjct 6478672 CTCG--GGGGTCACATAACTAGTTAGCATGCCAGAGTCTCGTTTGTTATAGGAATTAACC 6478615
Query 184 AGACAAATCACTCCACCAACTAAGAA 209
|||||||| ||||||||||||||||
Sbjct 6478614 AGACAAATGGCTCCACCAACTAAGAA 6478589
>seq24850
Length=564
Score = 116 bits (128), Expect = 6e-24
Identities = 88/101 (87%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 459 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 517
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| | || |||||| | |||| | ||||||||||||||
Sbjct 518 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 557
>seq617
Length=1918974
Score = 111 bits (122), Expect = 3e-22
Identities = 73/81 (90%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| || | ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 162517 CTAGTTAGCATGTCAGAGTCTCATTTGTTATCGGAATTAACCAGACAAATCACTCCACCA 162576
Query 202 ACTAAGAACGGCCATGCACCA 222
|||||||||||||||| ||||
Sbjct 162577 ACTAAGAACGGCCATGTACCA 162597
>seq2223
Length=206746
Score = 98.7 bits (108), Expect = 2e-18
Identities = 137/186 (74%), Gaps = 12/186 (6%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| | |||||| |||| | |||||||||||||||| |||||| |||||| ||
Sbjct 87089 GTCAGTGTAGTGTGCGTGCAGCCCTGGACATCTAAGGGCATCATAGACCTTTTATTG-CT 87147
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC--CA 129
||| | || |||||| | |||| | ||||| ||||||| | | ||| || |
Sbjct 87148 CAATC-TCAGGTGGCTGAATGCCACTTGTCCCCCTAAGAAGTTGGGGGACACTGACTGCT 87206
Query 130 T----AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
| |||| ||| || |||||| | || |||| |||| || || |||||||||||
Sbjct 87207 TGGGGAGTC-ATGTAACTCGTTAGCATGCTAGTGTCTTGTTCATTTTCAGAATTAACCAG 87265
Query 186 ACAAAT 191
||| ||
Sbjct 87266 ACACAT 87271
>seq68
Length=4653400
Score = 98.7 bits (108), Expect = 2e-18
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| || ||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 3134776 GTCAGTGTAGCATGCATGCATCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 3134718
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| | ||| |||||| | | || | ||||||||||| ||
Sbjct 3134717 CAATC-TCCGGTGGCTGAATGTCACTTGTCCCTCTAAGGAG 3134678
>seq96
Length=9397080
Score = 75.2 bits (82), Expect = 2e-11
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||| ||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 9002300 AAGAATTGCCATGCACCACCACTCATGGAGTCAAGAAAGAGCTATCAATCTGTC 9002247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796561320801
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |