Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1092 325 6e-87 seq705 188 1e-45 seq46 154 2e-35 seq193 140 5e-31 seq24850 116 6e-24 seq617 111 3e-22 seq2223 98.7 2e-18 seq68 98.7 2e-18 seq96 75.2 2e-11 >seq1092 Length=135615 Score = 325 bits (360), Expect = 6e-87 Identities = 230/260 (88%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 133077 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 133018 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---A 118 |||||||||||||||||||||||| |||| ||| || ||||||||||||||||| | Sbjct 133017 CCTGTTATTGCCTCAAACTTCCATCGGCTTGAAACCGATAGTCCCTCTAAGAAGTGGATA 132958 Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 ||| ||| || | | |||||||| |||||||||||||||||||||||| ||| Sbjct 132957 ACCAGCAA--ATGCTAGCACCA-CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAAT 132901 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 132900 TAAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAA 132841 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 132840 GAAAGAGCTCTCAATCTGTC 132821 >seq705 Length=2403095 Score = 188 bits (208), Expect = 1e-45 Identities = 174/215 (81%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 1147100 GTCAGTATAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 1147042 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 1147041 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGCACGCCGACCGCT 1146983 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 1146982 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 1146923 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 ||||| ||||||||||||||||||||||||||||| Sbjct 1146922 AAATCGCTCCACCAACTAAGAACGGCCATGCACCA 1146888 >seq46 Length=9635315 Score = 154 bits (170), Expect = 2e-35 Identities = 155/196 (79%), Gaps = 9/196 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 1392884 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 1392826 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACC-AT 130 ||| | || |||||| | |||| | ||||||||||||| | | | || ||| | Sbjct 1392825 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACTCCGACCGCT 1392767 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | |||||||||||||| |||||||||||||| Sbjct 1392766 TGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATTGGAATTAACCAGAC 1392707 Query 188 AAATCACTCCACCAAC 203 ||||| |||||||||| Sbjct 1392706 AAATCGCTCCACCAAC 1392691 >seq193 Length=6558526 Score = 140 bits (154), Expect = 5e-31 Identities = 157/206 (76%), Gaps = 17/206 (8%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 6478788 GTCAGTGTAGCACGGGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 6478730 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCATA 131 ||| | || |||||| | |||| | ||||||||||||| | | || ||| Sbjct 6478729 CAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCCGACC--G 6478673 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| ||| |||||| | | |||||||| ||||| |||||||||| Sbjct 6478672 CTCG--GGGGTCACATAACTAGTTAGCATGCCAGAGTCTCGTTTGTTATAGGAATTAACC 6478615 Query 184 AGACAAATCACTCCACCAACTAAGAA 209 |||||||| |||||||||||||||| Sbjct 6478614 AGACAAATGGCTCCACCAACTAAGAA 6478589 >seq24850 Length=564 Score = 116 bits (128), Expect = 6e-24 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 459 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 517 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 518 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 557 >seq617 Length=1918974 Score = 111 bits (122), Expect = 3e-22 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| || | ||||| || |||||||||||||||||||||||||||||||||| Sbjct 162517 CTAGTTAGCATGTCAGAGTCTCATTTGTTATCGGAATTAACCAGACAAATCACTCCACCA 162576 Query 202 ACTAAGAACGGCCATGCACCA 222 |||||||||||||||| |||| Sbjct 162577 ACTAAGAACGGCCATGTACCA 162597 >seq2223 Length=206746 Score = 98.7 bits (108), Expect = 2e-18 Identities = 137/186 (74%), Gaps = 12/186 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| | |||||| |||| | |||||||||||||||| |||||| |||||| || Sbjct 87089 GTCAGTGTAGTGTGCGTGCAGCCCTGGACATCTAAGGGCATCATAGACCTTTTATTG-CT 87147 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC--CA 129 ||| | || |||||| | |||| | ||||| ||||||| | | ||| || | Sbjct 87148 CAATC-TCAGGTGGCTGAATGCCACTTGTCCCCCTAAGAAGTTGGGGGACACTGACTGCT 87206 Query 130 T----AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 | |||| ||| || |||||| | || |||| |||| || || ||||||||||| Sbjct 87207 TGGGGAGTC-ATGTAACTCGTTAGCATGCTAGTGTCTTGTTCATTTTCAGAATTAACCAG 87265 Query 186 ACAAAT 191 ||| || Sbjct 87266 ACACAT 87271 >seq68 Length=4653400 Score = 98.7 bits (108), Expect = 2e-18 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || ||| ||||| |||||||||||||||||||||||||||||| || Sbjct 3134776 GTCAGTGTAGCATGCATGCATCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 3134718 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | ||| |||||| | | || | ||||||||||| || Sbjct 3134717 CAATC-TCCGGTGGCTGAATGTCACTTGTCCCTCTAAGGAG 3134678 >seq96 Length=9397080 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||||||||||||| ||| || |||||||||||||||||||||||| Sbjct 9002300 AAGAATTGCCATGCACCACCACTCATGGAGTCAAGAAAGAGCTATCAATCTGTC 9002247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796561320801