Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq500 459 5e-127 seq50 306 6e-81 seq204 217 3e-54 seq214 149 1e-33 seq1196 145 1e-32 seq487 132 8e-29 seq26588 87.8 3e-15 >seq500 Length=997981 Score = 459 bits (508), Expect = 5e-127 Identities = 280/296 (95%), Gaps = 1/296 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 811166 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 811107 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811106 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 811047 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 811046 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAATGTCGCTA 810987 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810986 TGAACGCTTGACTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 810927 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810926 TCAAATTCCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 810871 >seq50 Length=9356277 Score = 306 bits (338), Expect = 6e-81 Identities = 204/226 (90%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 6955751 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 6955810 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 6955811 ACGACGGTCTAAACCCAGCTCACGATCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 6955870 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6955871 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 6955930 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 6955931 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGAGGTAACTTTTC 6955976 >seq204 Length=1604294 Score = 217 bits (240), Expect = 3e-54 Identities = 170/202 (84%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 454773 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 454714 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct 454713 ACGACGGTCTAAACCCAGCTCACTTTTCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 454654 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||| ||| |||| |||||||||| || | ||| | | Sbjct 454653 AATTCTGCTTCACAATGATAGGAAGCGCCAACATTGAAGGATCAAGGAGTGATGTCACCA 454594 Query 180 TGAACGCTTGGCTGCCACAAGC 201 ||||| |||||| ||||||||| Sbjct 454593 TGAACACTTGGCAGCCACAAGC 454572 >seq214 Length=5267106 Score = 149 bits (164), Expect = 1e-33 Identities = 128/158 (81%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 140 GGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC---GCTATGAACGCTTGGCTGCCA 196 |||||||||||||| ||||||||||| ||| ||||| ||||||||||| |||| |||| Sbjct 1628429 GGAAGAGCCGACATGGAAGGATCAAAGAGCGACGTCTTAGCTATGAACGCGTGGCCGCCA 1628488 Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT 256 ||||||||||||||| ||||||||||||||| |||||| || | ||| | || || Sbjct 1628489 CAAGCCAGTTATCCCAGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCT 1628548 Query 257 AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||| | |||| | |||||| ||| |||||||| Sbjct 1628549 GAAGGATTGTGAGGCTCCTCTTTCACGGTCTGTATTCA 1628586 >seq1196 Length=681713 Score = 145 bits (160), Expect = 1e-32 Identities = 95/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||| ||| |||||| |||||||| |||||||||||||||||||||| || ||| Sbjct 371716 GAATTCTGTTTCACAATGATACGAAGAGCCAACATCGAAGGATCAAAAAGCAATGTTGCT 371657 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 371656 ATGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTT 371612 Score = 145 bits (160), Expect = 1e-32 Identities = 95/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||| ||| |||||| |||||||| |||||||||||||||||||||| || ||| Sbjct 424977 GAATTCTGTTTCACAATGATACGAAGAGCCAACATCGAAGGATCAAAAAGCAATGTTGCT 424918 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 424917 ATGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTT 424873 >seq487 Length=3510639 Score = 132 bits (146), Expect = 8e-29 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 114 TTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACG 173 |||| |||||||||||| ||||||||||| | |||||| ||||||||||||| || Sbjct 544069 TTACTGAATTCTGCTTCACAATGATAGGAAGGACAGACATCAAAGGATCAAAAAGTCACA 544128 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 | ||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||| Sbjct 544129 TTGCTATGACTGCTTGGCCACCACAAGCCAGTTATCCCTGTGTTAACTTTTCTGATACCT 544188 Query 234 C 234 | Sbjct 544189 C 544189 >seq26588 Length=448 Score = 87.8 bits (96), Expect = 3e-15 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 |||||||||||||||||||| | |||||||||||| |||||| || | ||| | | Sbjct 205 GCCACAAGCCAGTTATCCCTCTAGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAG 146 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||||||| ||||| | |||||||||| ||||||| Sbjct 145 GTCAGAAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATTC 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854135810976