Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq500 459 5e-127
seq50 306 6e-81
seq204 217 3e-54
seq214 149 1e-33
seq1196 145 1e-32
seq487 132 8e-29
seq26588 87.8 3e-15
>seq500
Length=997981
Score = 459 bits (508), Expect = 5e-127
Identities = 280/296 (95%), Gaps = 1/296 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 811166 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 811107
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811106 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 811047
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 811046 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAATGTCGCTA 810987
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810986 TGAACGCTTGACTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 810927
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810926 TCAAATTCCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 810871
>seq50
Length=9356277
Score = 306 bits (338), Expect = 6e-81
Identities = 204/226 (90%), Gaps = 1/226 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 6955751 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 6955810
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 6955811 ACGACGGTCTAAACCCAGCTCACGATCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 6955870
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 6955871 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 6955930
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225
|||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 6955931 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGAGGTAACTTTTC 6955976
>seq204
Length=1604294
Score = 217 bits (240), Expect = 3e-54
Identities = 170/202 (84%), Gaps = 1/202 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 454773 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 454714
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 454713 ACGACGGTCTAAACCCAGCTCACTTTTCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 454654
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||| ||| |||| |||||||||| || | ||| | |
Sbjct 454653 AATTCTGCTTCACAATGATAGGAAGCGCCAACATTGAAGGATCAAGGAGTGATGTCACCA 454594
Query 180 TGAACGCTTGGCTGCCACAAGC 201
||||| |||||| |||||||||
Sbjct 454593 TGAACACTTGGCAGCCACAAGC 454572
>seq214
Length=5267106
Score = 149 bits (164), Expect = 1e-33
Identities = 128/158 (81%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 140 GGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC---GCTATGAACGCTTGGCTGCCA 196
|||||||||||||| ||||||||||| ||| ||||| ||||||||||| |||| ||||
Sbjct 1628429 GGAAGAGCCGACATGGAAGGATCAAAGAGCGACGTCTTAGCTATGAACGCGTGGCCGCCA 1628488
Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT 256
||||||||||||||| ||||||||||||||| |||||| || | ||| | || ||
Sbjct 1628489 CAAGCCAGTTATCCCAGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCT 1628548
Query 257 AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
|||||| | |||| | |||||| ||| ||||||||
Sbjct 1628549 GAAGGATTGTGAGGCTCCTCTTTCACGGTCTGTATTCA 1628586
>seq1196
Length=681713
Score = 145 bits (160), Expect = 1e-32
Identities = 95/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||| ||| |||||| |||||||| |||||||||||||||||||||| || |||
Sbjct 371716 GAATTCTGTTTCACAATGATACGAAGAGCCAACATCGAAGGATCAAAAAGCAATGTTGCT 371657
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 371656 ATGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTT 371612
Score = 145 bits (160), Expect = 1e-32
Identities = 95/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||| ||| |||||| |||||||| |||||||||||||||||||||| || |||
Sbjct 424977 GAATTCTGTTTCACAATGATACGAAGAGCCAACATCGAAGGATCAAAAAGCAATGTTGCT 424918
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 424917 ATGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTT 424873
>seq487
Length=3510639
Score = 132 bits (146), Expect = 8e-29
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 114 TTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACG 173
|||| |||||||||||| ||||||||||| | |||||| ||||||||||||| ||
Sbjct 544069 TTACTGAATTCTGCTTCACAATGATAGGAAGGACAGACATCAAAGGATCAAAAAGTCACA 544128
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
| ||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||
Sbjct 544129 TTGCTATGACTGCTTGGCCACCACAAGCCAGTTATCCCTGTGTTAACTTTTCTGATACCT 544188
Query 234 C 234
|
Sbjct 544189 C 544189
>seq26588
Length=448
Score = 87.8 bits (96), Expect = 3e-15
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252
|||||||||||||||||||| | |||||||||||| |||||| || | ||| | |
Sbjct 205 GCCACAAGCCAGTTATCCCTCTAGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAG 146
Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| | |||||||| ||||| | |||||||||| |||||||
Sbjct 145 GTCAGAAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATTC 105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854135810976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |