Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq1092 95.1 7e-18
seq24850 91.5 9e-17
seq705 86.0 4e-15
seq46 84.2 1e-14
>seq1092
Length=135615
Score = 95.1 bits (104), Expect = 7e-18
Identities = 69/76 (91%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||||||||| || |||||| || ||||||||||| |||||||||||||||||||
Sbjct 133260 CTCACTAAGCCATT-CAATCGGTACTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 133203
Query 109 TAATACAACGCAAGCT 124
|||| |||||||||||
Sbjct 133202 TAAT-CAACGCAAGCT 133188
>seq24850
Length=564
Score = 91.5 bits (100), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 261 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 318
Query 109 TAATACAACGCAAGCT 124
|||| |||||||||||
Sbjct 319 TAAT-CAACGCAAGCT 333
>seq705
Length=2403095
Score = 86.0 bits (94), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1147298 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 1147241
Query 109 TAATACAACGCAAGCT 124
|||| |||| ||||||
Sbjct 1147240 TAAT-CAACACAAGCT 1147226
>seq46
Length=9635315
Score = 84.2 bits (92), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 3/75 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1393082 CTCACTAAACCATC-CAATCGGTAGTA-GCGACTGGCGGTGTGTACAAAGGGCAGGGACT 1393025
Query 109 TAATACAACGCAAGC 123
|||| ||||||||||
Sbjct 1393024 TAAT-CAACGCAAGC 1393011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300712802780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |