Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1092 95.1 7e-18 seq24850 91.5 9e-17 seq705 86.0 4e-15 seq46 84.2 1e-14 >seq1092 Length=135615 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||||||||| || |||||| || ||||||||||| ||||||||||||||||||| Sbjct 133260 CTCACTAAGCCATT-CAATCGGTACTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 133203 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 133202 TAAT-CAACGCAAGCT 133188 >seq24850 Length=564 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 261 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 318 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 319 TAAT-CAACGCAAGCT 333 >seq705 Length=2403095 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1147298 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 1147241 Query 109 TAATACAACGCAAGCT 124 |||| |||| |||||| Sbjct 1147240 TAAT-CAACACAAGCT 1147226 >seq46 Length=9635315 Score = 84.2 bits (92), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||| ||||| ||||||||||||||||||| Sbjct 1393082 CTCACTAAACCATC-CAATCGGTAGTA-GCGACTGGCGGTGTGTACAAAGGGCAGGGACT 1393025 Query 109 TAATACAACGCAAGC 123 |||| |||||||||| Sbjct 1393024 TAAT-CAACGCAAGC 1393011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300712802780