Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq1092 381 1e-103
seq24850 197 3e-48
seq46 188 1e-45
seq705 179 7e-43
seq193 113 9e-23
seq68 82.4 1e-13
seq2223 77.0 6e-12
>seq1092
Length=135615
Score = 381 bits (422), Expect = 1e-103
Identities = 272/310 (88%), Gaps = 3/310 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| |||||||||||||| |||||||| || || || || ||| | ||||||||
Sbjct 132912 GAACGAGACCTTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTATCCACTTCTTAG 132971
Query 80 AGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132972 AGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 133031
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
||| ||||||||||||||||||||||||||||| |||||| ||||| | |||||||||
Sbjct 133032 AGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTA--ACCTTGGCC 133089
Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258
| |||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 133090 GAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATT 133149
Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318
||||||||||||||||| ||||||||| ||| ||||| ||| |||||||||| ||||||
Sbjct 133150 GCTCTTCAACGAGGAATTCCTAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCT 133209
Query 319 GCCCTTTGTA 328
||||||||||
Sbjct 133210 GCCCTTTGTA 133219
>seq24850
Length=564
Score = 197 bits (218), Expect = 3e-48
Identities = 201/258 (78%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 557 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 500
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 499 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 440
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 439 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 380
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||
Sbjct 379 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 320
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 319 AAGTCCCTGCCCTTTGTA 302
>seq46
Length=9635315
Score = 188 bits (208), Expect = 1e-45
Identities = 199/258 (77%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 1392786 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1392843
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || | || | |
Sbjct 1392844 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCATGTGCCTAC 1392903
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| |||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 1392904 CCTACGCCGGCAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 1392963
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| | | ||||| || |||||||||
Sbjct 1392964 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGGTCATACGCTTGCGTTGATT 1393023
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 1393024 AAGTCCCTGCCCTTTGTA 1393041
>seq705
Length=2403095
Score = 179 bits (198), Expect = 7e-43
Identities = 197/258 (76%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 1147002 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1147059
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||||| |||||| | || || || | |
Sbjct 1147060 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTATACTGACTGGCTCAGCGTGTGCCTAC 1147119
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| | | || | | || || ||||||| | | ||||
Sbjct 1147120 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCATGATGGGGATCGGGGATTG 1147179
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | |||||||||| || |||||| ||| ||||| ||| | |||||||
Sbjct 1147180 CAATTATTCCCTATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGTGTTGATT 1147239
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 1147240 AAGTCCCTGCCCTTTGTA 1147257
>seq193
Length=6558526
Score = 113 bits (124), Expect = 9e-23
Identities = 140/188 (74%), Gaps = 3/188 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 6478690 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 6478747
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||| || ||||||||||| | || || || | | |
Sbjct 6478748 ATGCCCTTAGATGTCCGGGGCTGCACCCGTGCTACACTGACTGGCTCAGCGTGTGCCTAA 6478807
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||| | ||| |||||| | | || | | ||||| |||| || | | ||||
Sbjct 6478808 CCTATGCCAGCAGGCGGGGGTAACCCATTGAACCCCATTCGTGATGGGTATTGGGGATTG 6478867
Query 251 CAATTATT 258
||||||||
Sbjct 6478868 CAATTATT 6478875
>seq68
Length=4653400
Score = 82.4 bits (90), Expect = 1e-13
Identities = 81/101 (80%), Gaps = 3/101 (3%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|| ||||||||||| | | | | |||| ||| | ||||| ||||||||||||||||
Sbjct 3134678 CTCCTTAGAGGGACAAGTGACATTCAGCCACCGGA-GATTGAG-CAATAACAGGTCTGTG 3134735
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
|||||||||||||| ||||| ||| || |||||||||||
Sbjct 3134736 ATGCCCTTAGATGTCCTGGGATGCATGCATGCTACACTGAC 3134776
>seq2223
Length=206746
Score = 77.0 bits (84), Expect = 6e-12
Identities = 80/101 (79%), Gaps = 3/101 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||| ||||| | ||| | |||| || | ||||| |||||| |||||| ||
Sbjct 87187 CTTCTTAGGGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAAAAGGTCTATG 87130
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
|||||||||||||| | |||| |||||| | ||||||||||
Sbjct 87129 ATGCCCTTAGATGTCCAGGGCTGCACGCACACTACACTGAC 87089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946907116288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |