Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1092 381 1e-103 seq24850 197 3e-48 seq46 188 1e-45 seq705 179 7e-43 seq193 113 9e-23 seq68 82.4 1e-13 seq2223 77.0 6e-12 >seq1092 Length=135615 Score = 381 bits (422), Expect = 1e-103 Identities = 272/310 (88%), Gaps = 3/310 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||| |||||||| || || || || ||| | |||||||| Sbjct 132912 GAACGAGACCTTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTATCCACTTCTTAG 132971 Query 80 AGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132972 AGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 133031 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||| ||||||||||||||||||||||||||||| |||||| ||||| | ||||||||| Sbjct 133032 AGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTA--ACCTTGGCC 133089 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||| Sbjct 133090 GAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATT 133149 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||| ||| ||||| ||| |||||||||| |||||| Sbjct 133150 GCTCTTCAACGAGGAATTCCTAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCT 133209 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 133210 GCCCTTTGTA 133219 >seq24850 Length=564 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 557 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 500 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 499 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 440 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 439 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 380 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 379 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 320 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 319 AAGTCCCTGCCCTTTGTA 302 >seq46 Length=9635315 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1392786 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1392843 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || | || | | Sbjct 1392844 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCATGTGCCTAC 1392903 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| |||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 1392904 CCTACGCCGGCAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 1392963 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| | | ||||| || ||||||||| Sbjct 1392964 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGGTCATACGCTTGCGTTGATT 1393023 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1393024 AAGTCCCTGCCCTTTGTA 1393041 >seq705 Length=2403095 Score = 179 bits (198), Expect = 7e-43 Identities = 197/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1147002 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1147059 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||| |||||| | || || || | | Sbjct 1147060 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTATACTGACTGGCTCAGCGTGTGCCTAC 1147119 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | || || ||||||| | | |||| Sbjct 1147120 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCATGATGGGGATCGGGGATTG 1147179 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | |||||||||| || |||||| ||| ||||| ||| | ||||||| Sbjct 1147180 CAATTATTCCCTATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGTGTTGATT 1147239 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1147240 AAGTCCCTGCCCTTTGTA 1147257 >seq193 Length=6558526 Score = 113 bits (124), Expect = 9e-23 Identities = 140/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 6478690 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 6478747 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||| || ||||||||||| | || || || | | | Sbjct 6478748 ATGCCCTTAGATGTCCGGGGCTGCACCCGTGCTACACTGACTGGCTCAGCGTGTGCCTAA 6478807 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| | ||| |||||| | | || | | ||||| |||| || | | |||| Sbjct 6478808 CCTATGCCAGCAGGCGGGGGTAACCCATTGAACCCCATTCGTGATGGGTATTGGGGATTG 6478867 Query 251 CAATTATT 258 |||||||| Sbjct 6478868 CAATTATT 6478875 >seq68 Length=4653400 Score = 82.4 bits (90), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 || ||||||||||| | | | | |||| ||| | ||||| |||||||||||||||| Sbjct 3134678 CTCCTTAGAGGGACAAGTGACATTCAGCCACCGGA-GATTGAG-CAATAACAGGTCTGTG 3134735 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||| ||||| ||| || ||||||||||| Sbjct 3134736 ATGCCCTTAGATGTCCTGGGATGCATGCATGCTACACTGAC 3134776 >seq2223 Length=206746 Score = 77.0 bits (84), Expect = 6e-12 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||| ||||| | ||| | |||| || | ||||| |||||| |||||| || Sbjct 87187 CTTCTTAGGGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAAAAGGTCTATG 87130 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||| | |||| |||||| | |||||||||| Sbjct 87129 ATGCCCTTAGATGTCCAGGGCTGCACGCACACTACACTGAC 87089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946907116288