Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq500 776 0.0 seq640 450 4e-124 seq1496 419 8e-115 seq12257 410 4e-112 seq120 192 2e-46 seq987 178 4e-42 seq1281 143 9e-32 seq522 116 1e-23 seq221 98.7 3e-18 seq325 89.7 2e-15 seq46 89.7 2e-15 seq1384 82.4 2e-13 seq654 82.4 2e-13 seq1542 80.6 9e-13 seq538 80.6 9e-13 seq29 78.8 3e-12 seq419 75.2 4e-11 seq126 75.2 4e-11 >seq500 Length=997981 Score = 776 bits (860), Expect = 0.0 Identities = 501/541 (93%), Gaps = 9/541 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 810839 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACATCTGCGTTATC 810780 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 810779 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 810720 Query 127 GGCCCGCGAA--GGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 |||| |||| ||||||| || || |||| ||| |||| |||| |||||||||| Sbjct 810719 AGCCC-CGAATGGGACCTTGAATGCTAGAACGTGGAAAATGAATTCCAGCTCCGCTTCAT 810661 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 ||| |||||||| |||| |||| ||||||||||||||||| |||||||| |||||||| Sbjct 810660 TGAATAAGTAAAGAAACTATAAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 810604 Query 244 TTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||||||||||| ||| | ||| ||||||| ||| ||||||||||||||||||||||| Sbjct 810603 TTATTCTACACC-CTCTATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGT 810545 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810544 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 810485 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810484 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 810425 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 810424 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAAT 810365 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810364 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 810305 Query 543 G 543 | Sbjct 810304 G 810304 >seq640 Length=383956 Score = 450 bits (498), Expect = 4e-124 Identities = 278/297 (94%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 80935 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 80876 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 80875 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 80816 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 80815 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 80756 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||| || || ||||||| |||| Sbjct 80755 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTGCCACCAATTACCCGTGCTTTA 80696 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 80695 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 80639 >seq1496 Length=156218 Score = 419 bits (464), Expect = 8e-115 Identities = 249/260 (96%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 274 AGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGT 333 |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 16099 AGTCAGACTAGAGCCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCTGT 16040 Query 334 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| Sbjct 16039 TCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCAT 15980 Query 394 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15979 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 15920 Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 15919 TCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTTAGAGCACTGGGCA 15860 Query 514 GAAATCACATTGCGTCAACA 533 |||||||||| ||||||||| Sbjct 15859 GAAATCACATCGCGTCAACA 15840 >seq12257 Length=17741 Score = 410 bits (454), Expect = 4e-112 Identities = 247/260 (95%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 274 AGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGT 333 |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 11760 AGTCAGACTAGAGCCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCTGT 11701 Query 334 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| Sbjct 11700 TCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCAT 11641 Query 394 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11640 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 11581 Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 |||||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||| Sbjct 11580 TCCCGCCGTTTACCCGTGCTTCATTGGATTTCTTCACTTTGACATTTAGAGCACTGGGCA 11521 Query 514 GAAATCACATTGCGTCAACA 533 |||||||||| ||||||||| Sbjct 11520 GAAATCACATCGCGTCAACA 11501 >seq120 Length=4857412 Score = 192 bits (212), Expect = 2e-46 Identities = 120/129 (93%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 || |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1449592 TAGTTAGATGATGAGGCATTTGGCTACCTTAAGAGAATCATAGTTACTCCCGCCGTTTAC 1449533 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1449532 CTGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCAC 1449473 Query 527 GTCAACATC 535 |||||||| Sbjct 1449472 ATCAACATC 1449464 >seq987 Length=92071 Score = 178 bits (196), Expect = 4e-42 Identities = 110/118 (93%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 4114 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 4055 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4054 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 3997 >seq1281 Length=139017 Score = 143 bits (158), Expect = 9e-32 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||| |||||||||||||||||||||||||||| | ||||||| ||| ||| | Sbjct 117917 TAATTAGATGATGAGGCATTTGGCTACCTTAAGAGAGTCACACTTACTCCTGCCTTTTGC 117976 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 | | ||| ||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 117977 TCACACTTCATTGAATTTCTTCACTTTGACATTCAAACTACTGAGCAGAAATCACAT 118033 Score = 123 bits (136), Expect = 8e-26 Identities = 98/117 (84%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||| ||||||||||||||||||| ||| ||| | ||||||| ||| ||| | Sbjct 29974 TAATTAGATGATGAGGCATTTGGCTACCTTAGGAG--TCACACTTACTCCTGCCTTTTGC 29917 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 || | ||| |||||| |||||||| ||||||||| | |||| ||||||||||||| Sbjct 29916 CCACACTTCATTGAATGTCTTCACTATGACATTCAAACTACTGAGCAGAAATCACAT 29860 Score = 80.6 bits (88), Expect = 9e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 || ||||||| ||| ||| | | | ||| ||||||||||||||||||||||||| | | Sbjct 110237 TAATTACTCCTGCCTTTTGCTCACACTTCATTGAATTTCTTCACTTTGACATTCAAACTA 110296 Query 507 CTGGGCAGAAATCACAT 523 ||| ||||||||||||| Sbjct 110297 CTGAGCAGAAATCACAT 110313 >seq522 Length=3028294 Score = 116 bits (128), Expect = 1e-23 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 || ||||||||||||||||| |||| ||||||||| | |||| |||| |||| |||||| Sbjct 2393791 CCATAAGAGAGTCATAGTTATTCCCACCGTTTACCTGTGCTTCATTGACTTTCCTCACTT 2393850 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 |||||||||||||||| || |||||| ||||||| Sbjct 2393851 TGACATTCAGAGCACTAGGTAGAAATGACATTGC 2393884 >seq221 Length=1987868 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||| || ||||||| |||| |||| | |||||| |||||||| ||| Sbjct 1509271 CTTCTGCTCCACAGAAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGAACACCTGCATTACC 1509212 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 | | |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 1509211 ATGTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 1509165 >seq325 Length=1324527 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||||||| ||||| | |||| |||| | ||||| ||||||||| ||| Sbjct 473372 CTTCTGTTCCACAGGAGGTTTCTATCCTCCCTGAGCTCACCTTAAGACACCTGCATTACC 473431 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 | | |||| ||| || |||||| ||||||||||||||| || |||| Sbjct 473432 ATATGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGGCACTGTC 473478 >seq46 Length=9635315 Score = 89.7 bits (98), Expect = 2e-15 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 8712477 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 8712536 Query 67 GTTTAACAGATGTGCCGCCCC-AGCCAAACT 96 |||| |||| ||| ||||||| || |||||| Sbjct 8712537 GTTTGACAGGTGTACCGCCCCAAGTCAAACT 8712567 >seq1384 Length=524227 Score = 82.4 bits (90), Expect = 2e-13 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTT 70 || || ||||||| ||||||| |||| |||| | ||||||||||||||| ||| ||| Sbjct 293977 TGTTCCACAGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGCATTACCATTT 294036 Query 71 AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| ||| | ||| || |||||||| ||||| || |||| Sbjct 294037 GACAGGTGTACTGCCTCAATTAAACTCCCTACCTGGCACTGTC 294079 >seq654 Length=1084366 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/107 (78%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||| ||||||| || ||| |||| || || | ||||||||||||||| ||| Sbjct 33222 CTTTTGCC--ACAGGAGGGTTTTGTCCTCCCTGTGTTCACCTTAGGACACCTGCATTACT 33279 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| | | | || ||||||||||||||| || |||| Sbjct 33280 GTTTGACAGGTGTACTGTCGCAATCAAACTCCCCACCTGGCACTGTC 33326 >seq1542 Length=221630 Score = 80.6 bits (88), Expect = 9e-13 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||| | ||||||| |||| |||| | |||||||||||||| |||| Sbjct 74155 CTTCTGCTCCACAGGGGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGTGTTACC 74096 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 ||| |||| | | ||| || ||||||||||||||| || Sbjct 74095 ATTTGACAGGCATACAGCCTCAATCAAACTCCCCACCTGGCA 74054 >seq538 Length=3299909 Score = 80.6 bits (88), Expect = 9e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||| |||||||||||| ||||| ||| |||||||||| |||| ||| |||| ||| Sbjct 1440880 GGAGGTTTCTGTTCTCCCTGAGTTTGTCTTGGGACACCTGCATTATCCTTTGACAGGTGT 1440821 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || || || |||| |||||||||| || |||| Sbjct 1440820 ACCACCTCAATCAAATTCCCCACCTGGCATTGTC 1440787 >seq29 Length=12481696 Score = 78.8 bits (86), Expect = 3e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTT 70 ||||| ||||||| ||||||| |||| |||| | ||||| |||||| |||| ||| Sbjct 6773527 TGCTCCACAGGAGGTTTCTGTCCTCCCTGAGCTCTCCTTAAAACACCTATGTTACCATTT 6773468 Query 71 AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||| ||| | ||||| ||||||||||||||| || Sbjct 6773467 GACAGGTGTATCACCCCAATCAAACTCCCCACCTGGCA 6773430 >seq419 Length=3695551 Score = 75.2 bits (82), Expect = 4e-11 Identities = 84/109 (77%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTA-- 64 ||| ||||| ||||||| ||||||| |||| ||||| | | |||||||||||| | || Sbjct 84882 CTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAGTTCACTTTAGGACACCTGTGCTACC 84823 Query 65 TG-GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 || | || |||| || || ||||| || ||||||||||| || ||| Sbjct 84822 TGTGGTTGACAGGCGTACC-ACCCAGTTAAGCTCCCCACCTGGCACTGT 84775 >seq126 Length=7538066 Score = 75.2 bits (82), Expect = 4e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 28 CTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCC 87 |||| |||| |||| | |||||||||||||| || | |||| |||| | | ||||| Sbjct 855156 CTGTCCTCCCTGAGCTCACCTTAGGACACCTGTGTCACTGTTTGACAGGTATATGGCCCC 855097 Query 88 AGCCAAACTCCCCACCTGACAATGTC 113 || ||||||||||||||| || |||| Sbjct 855096 AGTCAAACTCCCCACCTGGCACTGTC 855071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634694379808