Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1092 581 1e-163 seq96 150 5e-34 seq547 127 6e-27 seq651 109 2e-21 seq27 96.9 1e-17 seq2357 95.1 4e-17 >seq1092 Length=135615 Score = 581 bits (644), Expect = 1e-163 Identities = 401/448 (90%), Gaps = 9/448 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||| || | |||||||||| |||||||||||||||||| Sbjct 132107 GTACTCATTCCAATTACAAGACCCGAATGGGCCCTGTATCGTTATTTATTGTCACTACCT 132048 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132047 CCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 131988 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 131987 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 131928 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 131927 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCA 131868 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||||||| ||| ||| ||||| | | ||| | Sbjct 131867 CAAGGCCATGCGATTCGAAAAGTTATTATGAATCATCAAAGAG-TCCGAA-GACATTGAT 131810 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||| | ||||| || |||| | |||| |||||||||||||||| Sbjct 131809 TTTTTATCTAATAAATACATCTCTTCCAAAGGGTCGAGATTTTAAGCATGTATTAGCTCT 131750 Query 359 AGAATTACCACGGTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGAT 413 ||||||||||| |||||||| |||| | || | | | |||| ||| ||||||||| Sbjct 131749 AGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGAT 131690 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTA 441 |||||||||||||||||||||||||||| Sbjct 131689 TTAATGAGCCATTCGCAGTTTCACTGTA 131662 >seq96 Length=9397080 Score = 150 bits (166), Expect = 5e-34 Identities = 128/154 (83%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | | Sbjct 1659596 TTGGATGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCATCA 1659655 Query 163 CCCGTTGATACCATGGTAGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 ||||| | | |||||||||| || | |||||||||||||||||||||||||| || Sbjct 1659656 CCCGTGGTCATCATGGTAGGCACAGCA-ACTACCATCGAAAGTTGATAGGGCAGACGTTC 1659714 Query 222 GAATGAACCATCGCCGGCTC-AAGGCCATGCGAT 254 ||||| | |||||| | | ||| | |||||| Sbjct 1659715 GAATGGGTCGTCGCCGCCACGGAGGGCGTGCGAT 1659748 >seq547 Length=2472806 Score = 127 bits (140), Expect = 6e-27 Identities = 95/110 (86%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||| ||||||||||||| | | || Sbjct 202157 CAAAGGAACCATAACTGATTTAATGAGCCATTCACAGTTTCACTGTACCAGCCGTGTGTA 202098 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 202097 CTTAGACATGAATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 202049 >seq651 Length=280687 Score = 109 bits (120), Expect = 2e-21 Identities = 109/136 (80%), Gaps = 8/136 (6%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| |||||| ||||||||||||||| || | | || ||| || |||| || Sbjct 9425 AGCAAGTATTAACTCTAGAATTACCACAGTAGGAGAAG-AGCAAGTGAC---CAAAGGAA 9480 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATTGCTTATACTTAGA 460 | ||||||||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct 9481 CCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCAGCCGTGC--GTACTTAGA 9538 Query 461 CATGCATGGCTTAATC 476 |||||||||||||||| Sbjct 9539 CATGCATGGCTTAATC 9554 >seq27 Length=10415296 Score = 96.9 bits (106), Expect = 1e-17 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 |||||| ||||| |||||||||||| ||||||||| |||||| | |||| ||||||| Sbjct 5121792 GGCTCCTTCTCCAGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCACGGTAGGCAC 5121851 Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||||||||||||||||||||||||| Sbjct 5121852 GGCGACTACCATCGAAAGTTGATAGGGCAGA 5121882 >seq2357 Length=67778 Score = 95.1 bits (104), Expect = 4e-17 Identities = 115/158 (73%), Gaps = 24/158 (15%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATCAA 397 |||| |||||| ||||||||||||||| |||||||| |||| | || | | | ||| Sbjct 4047 AGCAAGTATTAACTCTAGAATTACCACAGTTATCCAAGTAGGAGAAGAGCAAGTGACCAA 3988 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTT----- 451 | ||| |||||||||||| ||||||||| ||||||||||||| || || ||| Sbjct 3987 AGGAACCATAACTGATTTAGTGAGCCATTGACAGTTTCACTGTACCAGCTTACTTAGACA 3928 Query 452 -------------ATACTTAGACATGCATGGCTTAATC 476 ||||||||||||||| ||||||||| Sbjct 3927 TGTACAGCTGTACATACTTAGACATGCACGGCTTAATC 3890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509932969216