Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1092 581 1e-163
seq96 150 5e-34
seq547 127 6e-27
seq651 109 2e-21
seq27 96.9 1e-17
seq2357 95.1 4e-17
>seq1092
Length=135615
Score = 581 bits (644), Expect = 1e-163
Identities = 401/448 (90%), Gaps = 9/448 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||
Sbjct 132107 GTACTCATTCCAATTACAAGACCCGAATGGGCCCTGTATCGTTATTTATTGTCACTACCT 132048
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132047 CCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 131988
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 131987 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 131928
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 131927 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCA 131868
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| |||||||||||||||| ||| ||| ||||| | | ||| |
Sbjct 131867 CAAGGCCATGCGATTCGAAAAGTTATTATGAATCATCAAAGAG-TCCGAA-GACATTGAT 131810
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTTTAGCATGTATTAGCTCT 358
||||||||||||||||||| | ||||| || |||| | |||| ||||||||||||||||
Sbjct 131809 TTTTTATCTAATAAATACATCTCTTCCAAAGGGTCGAGATTTTAAGCATGTATTAGCTCT 131750
Query 359 AGAATTACCACGGTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGAT 413
||||||||||| |||||||| |||| | || | | | |||| ||| |||||||||
Sbjct 131749 AGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGAT 131690
Query 414 TTAATGAGCCATTCGCAGTTTCACTGTA 441
||||||||||||||||||||||||||||
Sbjct 131689 TTAATGAGCCATTCGCAGTTTCACTGTA 131662
>seq96
Length=9397080
Score = 150 bits (166), Expect = 5e-34
Identities = 128/154 (83%), Gaps = 3/154 (2%)
Strand=Plus/Plus
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | |
Sbjct 1659596 TTGGATGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCATCA 1659655
Query 163 CCCGTTGATACCATGGTAGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221
||||| | | |||||||||| || | |||||||||||||||||||||||||| ||
Sbjct 1659656 CCCGTGGTCATCATGGTAGGCACAGCA-ACTACCATCGAAAGTTGATAGGGCAGACGTTC 1659714
Query 222 GAATGAACCATCGCCGGCTC-AAGGCCATGCGAT 254
||||| | |||||| | | ||| | ||||||
Sbjct 1659715 GAATGGGTCGTCGCCGCCACGGAGGGCGTGCGAT 1659748
>seq547
Length=2472806
Score = 127 bits (140), Expect = 6e-27
Identities = 95/110 (86%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| ||||||||||||||||||||||| ||||||||||||| | | ||
Sbjct 202157 CAAAGGAACCATAACTGATTTAATGAGCCATTCACAGTTTCACTGTACCAGCCGTGTGTA 202098
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 202097 CTTAGACATGAATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 202049
>seq651
Length=280687
Score = 109 bits (120), Expect = 2e-21
Identities = 109/136 (80%), Gaps = 8/136 (6%)
Strand=Plus/Plus
Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402
|||| |||||| ||||||||||||||| || | | || ||| || |||| ||
Sbjct 9425 AGCAAGTATTAACTCTAGAATTACCACAGTAGGAGAAG-AGCAAGTGAC---CAAAGGAA 9480
Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATTGCTTATACTTAGA 460
| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 9481 CCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCAGCCGTGC--GTACTTAGA 9538
Query 461 CATGCATGGCTTAATC 476
||||||||||||||||
Sbjct 9539 CATGCATGGCTTAATC 9554
>seq27
Length=10415296
Score = 96.9 bits (106), Expect = 1e-17
Identities = 76/91 (84%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185
|||||| ||||| |||||||||||| ||||||||| |||||| | |||| |||||||
Sbjct 5121792 GGCTCCTTCTCCAGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCACGGTAGGCAC 5121851
Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGA 216
||||||||||||||||||||||||||
Sbjct 5121852 GGCGACTACCATCGAAAGTTGATAGGGCAGA 5121882
>seq2357
Length=67778
Score = 95.1 bits (104), Expect = 4e-17
Identities = 115/158 (73%), Gaps = 24/158 (15%)
Strand=Plus/Minus
Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATCAA 397
|||| |||||| ||||||||||||||| |||||||| |||| | || | | | |||
Sbjct 4047 AGCAAGTATTAACTCTAGAATTACCACAGTTATCCAAGTAGGAGAAGAGCAAGTGACCAA 3988
Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTT----- 451
| ||| |||||||||||| ||||||||| ||||||||||||| || || |||
Sbjct 3987 AGGAACCATAACTGATTTAGTGAGCCATTGACAGTTTCACTGTACCAGCTTACTTAGACA 3928
Query 452 -------------ATACTTAGACATGCATGGCTTAATC 476
||||||||||||||| |||||||||
Sbjct 3927 TGTACAGCTGTACATACTTAGACATGCACGGCTTAATC 3890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509932969216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |