Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1345 174 1e-38 seq498 150 1e-31 seq184 111 1e-19 seq657 107 2e-18 seq78 89.7 4e-13 >seq1345 Length=786133 Score = 174 bits (192), Expect = 1e-38 Identities = 563/874 (64%), Gaps = 49/874 (6%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 || |||||| | || | ||||| |||| |||||||| || | || || ||||| ||| Sbjct 220374 TTTCCCATCAAATACCATGATATCTGGCAGATGTACAAGAAAGATGAGGCCTCCTTTTGG 220433 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGT 61185 |||| |||||||| || | ||||| || || | ||||||| | | | || Sbjct 220434 ACGGCTGAGGAGGTGGACCTTTCCAAGGATATTCAGTACTGGGAAGCTCTGAAACCCAGT 220493 Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 || |||| | || ||||| ||| |||||||| || ||| | || |||||| Sbjct 220494 GAGAGACATGTTATACCTCATGTTCGGGCTTTCTTTGCAGCAAGTGACAGCATAGTCAAT 220553 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305 ||||| || || ||| ||| || || || ||||| | |||| || |||||||| Sbjct 220554 GAGAACTTGGTGAAACTATTCAGCCAAGAAGTTCAAGTCACAGAGGTCCGCTGTTTCTAT 220613 Query 61306 GGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACG 61365 |||||||| |||| ||| || ||| | || || || ||||||||| | || || || || Sbjct 220614 GGCTTCCAAATTGGCATAGAAAATATACATTCTGAAATGTACAGTCTCCTTATTGACACA 220673 Query 61366 T---ACAT--CAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATAC 61420 | | || || |||| ||| | | | | |||||||| || || | ||| | Sbjct 220674 TTAAAGATTCCAAGGAGAGGGAGTATC---------TCTTCAATGCTATTGAAAAGATGC 220724 Query 61421 C-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 | ||| || | || ||| ||| | ||||||| Sbjct 220725 CTTGCGTTGCACTGG-----GGA---------CAA---------------AGGGGCTACA 220755 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 | ||| ||| | | |||| ||||| | || || || | || || ||| || ||| Sbjct 220756 TATGGAGAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGTTCTTTT 220815 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 || |||| || ||| ||||||| || |||||||||||||| || || || ||||||| Sbjct 220816 GCATCAATATTCTGGCTGAAGAAGCGGGGACTTATGCCCGGCCTTACATTTTCCAATGAG 220875 Query 61600 TTGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658 | || | || | || |||||| | |||||||| ||||| || | ||||| | | Sbjct 220876 CTTATCAGCA-GAGATGAGGGCTTACATTGTGACTTTGCCTGCCTGATGTTCAAGC---A 220931 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 ||||| | || | |||| || | || || | || || | || | | || Sbjct 220932 CCTGGTACACAAGCCATAGGAGCAGAGAGTAAGTAAAATAATTATGAATGCCATGAGGAT 220991 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778 || ||||| || || || || || ||||| || || ||||| ||||| | || Sbjct 220992 AGAGCAGGAGTTCCTCACGGAGGCCTTGCCTGTGAAGCTTATCGGGATGAACCGCAATCT 221051 Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCG 61838 ||| |||||| ||||||||||| | ||| | ||| || | || |||| | || Sbjct 221052 GATGAAGCAGTACATTGAATTTGTGGTGGACAGGCTGATGCTGGAGCTGGGGTTTAACAA 221111 Query 61839 GATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGAC 61898 ||| | || |||| ||||||| |||||||| | ||||| || || | ||||| Sbjct 221112 GATTTTCAAAGTAGAAAATTCATTTGACTTCATGGAAAATATTTCACTAGAACGAAAGAC 221171 Query 61899 GAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || || || ||||| | || ||||| || ||| Sbjct 221172 AAACTTCTTTGAGAAGCCAGTGGGCGAGTACCAA 221205 >seq498 Length=2542268 Score = 150 bits (166), Expect = 1e-31 Identities = 403/607 (66%), Gaps = 17/607 (3%) Strand=Plus/Minus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCA 61271 || ||||| || || ||| | || ||||||||||| || ||| || ||| || || Sbjct 2187056 GCTTTCTTCGCAGCGAGTGACAGCATAGTCAATGAGAACTT---GGAGCGATTTAGC-CA 2187001 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| | ||||| || |||||||| |||||||| ||||||||||| || | Sbjct 2187000 AGAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACAT 2186941 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 || || || ||||||||| | || || || || ||||| | || ||| | || Sbjct 2186940 ACATTCTGAAATGTACAGTCTCCTTATTGACACCTACATTAAAGATTCTAAGGAGAGGGA 2186881 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 | |||| ||| || || ||||| || | |||||| ||| || || |||||||| Sbjct 2186880 GTATCTCTTCATTGCTATAGAAACGATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCCTT 2186821 Query 61452 CAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 |||||| | |||| |||||||| | ||||| | | || ||||| | Sbjct 2186820 GCGTTGGAT--TTGGGACAAAGAGGCTACATACAGAGAACGTGTTGTCGCCTTTGCCGCC 2186763 Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || || || | || ||| || || || | |||| || ||| | ||||| | ||| Sbjct 2186762 GTGGAAGGCATCTTCTTC---GGTTCTTTCACATCAATATTCTGGCTCAAGAAGCAGGGA 2186706 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTG 61628 || |||||||| || || || ||||||| | || | || | ||||||||| | || || Sbjct 2186705 CTGATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCA-GAGACGAGGGCTTACACTG 2186647 Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 ||| ||||| || | ||||| | | ||||| | || |||||| || | || Sbjct 2186646 TGACTTTGCCTGCCTGATGTTCAAGC---ACCTGGTACACAAGCCATCGGAGCAGAGGGT 2186590 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 || || || | || || | || || ||| | || || || || || ||||| Sbjct 2186589 AAAAGAAATAATTGTCAACGCAGTGAGGATAGAGCAGAAGTTCCTTACGGAGGCCTTGCC 2186530 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || |||||||| ||||| || || ||| |||||| || || ||||| || || Sbjct 2186529 TGTGAAGCTCATCGGGATGAACTGCACTCTGATGAAGCAGTACATCGAGTTTGTGGCAGA 2186470 Query 61809 CCGTCTG 61815 | | ||| Sbjct 2186469 CAGGCTG 2186463 >seq184 Length=3314118 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| ||||||||||| || | ||||| || |||||||| ||||| |||| Sbjct 1999471 TGGAGCGTTTCAGTCAGGAGGTGCAGGTTCCAGAGGCCCGCTGTTTCTATGGCTTTCAGA 1999412 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| || || |||||||||||| | || || ||||| |||||||| | Sbjct 1999411 TTCTCATCGAGAATGTTCATTCAGAGATGTACAGTTTACTAATAGATACTTACATCAGAG 1999352 Query 61376 A 61376 | Sbjct 1999351 A 1999351 >seq657 Length=1571634 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| ||||| |||| || || || Sbjct 950063 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTTTGCTG 950004 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | |||||| || ||||| ||||| || Sbjct 950003 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTCTGTCTG 949944 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 || ||||||||||| | |||||| Sbjct 949943 AGATTCAATGATGGCATACCAAAG 949920 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||| || ||||| ||||| || | Sbjct 947903 CATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGCTCTTCCTT 947844 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || ||| || |||||| ||||||||||||||||| ||||| || |||||||| Sbjct 947843 CCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGTA 947784 Query 66460 GATGGCGAA 66468 || || || Sbjct 947783 AATAGCAAA 947775 >seq78 Length=6419775 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || ||||| || ||||| ||||||| || |||||||| |||||||| Sbjct 5587162 TGGAGCGATTTAGC-CAGGAAGTTCAAGTCACGGAGGCCCGCTGTTTCTATGGCTTCCAA 5587104 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||||||||| || | || || || ||||||||| | || || || || ||||| Sbjct 5587103 ATTGCCATGGAAAACATACATTCTGAAATGTACAGTCTCCTGATTGACACCTACAT 5587048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397418176623440