Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 174 1e-38
seq498 150 1e-31
seq184 111 1e-19
seq657 107 2e-18
seq78 89.7 4e-13
>seq1345
Length=786133
Score = 174 bits (192), Expect = 1e-38
Identities = 563/874 (64%), Gaps = 49/874 (6%)
Strand=Plus/Plus
Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125
|| |||||| | || | ||||| |||| |||||||| || | || || ||||| |||
Sbjct 220374 TTTCCCATCAAATACCATGATATCTGGCAGATGTACAAGAAAGATGAGGCCTCCTTTTGG 220433
Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGT 61185
|||| |||||||| || | ||||| || || | ||||||| | | | ||
Sbjct 220434 ACGGCTGAGGAGGTGGACCTTTCCAAGGATATTCAGTACTGGGAAGCTCTGAAACCCAGT 220493
Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245
|| |||| | || ||||| ||| |||||||| || ||| | || ||||||
Sbjct 220494 GAGAGACATGTTATACCTCATGTTCGGGCTTTCTTTGCAGCAAGTGACAGCATAGTCAAT 220553
Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305
||||| || || ||| ||| || || || ||||| | |||| || ||||||||
Sbjct 220554 GAGAACTTGGTGAAACTATTCAGCCAAGAAGTTCAAGTCACAGAGGTCCGCTGTTTCTAT 220613
Query 61306 GGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACG 61365
|||||||| |||| ||| || ||| | || || || ||||||||| | || || || ||
Sbjct 220614 GGCTTCCAAATTGGCATAGAAAATATACATTCTGAAATGTACAGTCTCCTTATTGACACA 220673
Query 61366 T---ACAT--CAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATAC 61420
| | || || |||| ||| | | | | |||||||| || || | ||| |
Sbjct 220674 TTAAAGATTCCAAGGAGAGGGAGTATC---------TCTTCAATGCTATTGAAAAGATGC 220724
Query 61421 C-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479
| ||| || | || ||| ||| | |||||||
Sbjct 220725 CTTGCGTTGCACTGG-----GGA---------CAA---------------AGGGGCTACA 220755
Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539
| ||| ||| | | |||| ||||| | || || || | || || ||| || |||
Sbjct 220756 TATGGAGAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGTTCTTTT 220815
Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599
|| |||| || ||| ||||||| || |||||||||||||| || || || |||||||
Sbjct 220816 GCATCAATATTCTGGCTGAAGAAGCGGGGACTTATGCCCGGCCTTACATTTTCCAATGAG 220875
Query 61600 TTGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658
| || | || | || |||||| | |||||||| ||||| || | ||||| | |
Sbjct 220876 CTTATCAGCA-GAGATGAGGGCTTACATTGTGACTTTGCCTGCCTGATGTTCAAGC---A 220931
Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718
||||| | || | |||| || | || || | || || | || | | ||
Sbjct 220932 CCTGGTACACAAGCCATAGGAGCAGAGAGTAAGTAAAATAATTATGAATGCCATGAGGAT 220991
Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778
|| ||||| || || || || || ||||| || || ||||| ||||| | ||
Sbjct 220992 AGAGCAGGAGTTCCTCACGGAGGCCTTGCCTGTGAAGCTTATCGGGATGAACCGCAATCT 221051
Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCG 61838
||| |||||| ||||||||||| | ||| | ||| || | || |||| | ||
Sbjct 221052 GATGAAGCAGTACATTGAATTTGTGGTGGACAGGCTGATGCTGGAGCTGGGGTTTAACAA 221111
Query 61839 GATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGAC 61898
||| | || |||| ||||||| |||||||| | ||||| || || | |||||
Sbjct 221112 GATTTTCAAAGTAGAAAATTCATTTGACTTCATGGAAAATATTTCACTAGAACGAAAGAC 221171
Query 61899 GAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932
|| || || ||||| | || ||||| || |||
Sbjct 221172 AAACTTCTTTGAGAAGCCAGTGGGCGAGTACCAA 221205
>seq498
Length=2542268
Score = 150 bits (166), Expect = 1e-31
Identities = 403/607 (66%), Gaps = 17/607 (3%)
Strand=Plus/Minus
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCA 61271
|| ||||| || || ||| | || ||||||||||| || ||| || ||| || ||
Sbjct 2187056 GCTTTCTTCGCAGCGAGTGACAGCATAGTCAATGAGAACTT---GGAGCGATTTAGC-CA 2187001
Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331
|| || ||||| | ||||| || |||||||| |||||||| ||||||||||| || |
Sbjct 2187000 AGAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACAT 2186941
Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391
|| || || ||||||||| | || || || || ||||| | || ||| | ||
Sbjct 2186940 ACATTCTGAAATGTACAGTCTCCTTATTGACACCTACATTAAAGATTCTAAGGAGAGGGA 2186881
Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451
| |||| ||| || || ||||| || | |||||| ||| || || ||||||||
Sbjct 2186880 GTATCTCTTCATTGCTATAGAAACGATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCCTT 2186821
Query 61452 CAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509
|||||| | |||| |||||||| | ||||| | | || ||||| |
Sbjct 2186820 GCGTTGGAT--TTGGGACAAAGAGGCTACATACAGAGAACGTGTTGTCGCCTTTGCCGCC 2186763
Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569
|| || || | || ||| || || || | |||| || ||| | ||||| | |||
Sbjct 2186762 GTGGAAGGCATCTTCTTC---GGTTCTTTCACATCAATATTCTGGCTCAAGAAGCAGGGA 2186706
Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTG 61628
|| |||||||| || || || ||||||| | || | || | ||||||||| | || ||
Sbjct 2186705 CTGATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCA-GAGACGAGGGCTTACACTG 2186647
Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688
||| ||||| || | ||||| | | ||||| | || |||||| || | ||
Sbjct 2186646 TGACTTTGCCTGCCTGATGTTCAAGC---ACCTGGTACACAAGCCATCGGAGCAGAGGGT 2186590
Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748
|| || || | || || | || || ||| | || || || || || |||||
Sbjct 2186589 AAAAGAAATAATTGTCAACGCAGTGAGGATAGAGCAGAAGTTCCTTACGGAGGCCTTGCC 2186530
Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808
|| |||||||| ||||| || || ||| |||||| || || ||||| || ||
Sbjct 2186529 TGTGAAGCTCATCGGGATGAACTGCACTCTGATGAAGCAGTACATCGAGTTTGTGGCAGA 2186470
Query 61809 CCGTCTG 61815
| | |||
Sbjct 2186469 CAGGCTG 2186463
>seq184
Length=3314118
Score = 111 bits (122), Expect = 1e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| |||||| ||||||||||| || | ||||| || |||||||| ||||| ||||
Sbjct 1999471 TGGAGCGTTTCAGTCAGGAGGTGCAGGTTCCAGAGGCCCGCTGTTTCTATGGCTTTCAGA 1999412
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
|| ||| |||||||| || || |||||||||||| | || || ||||| |||||||| |
Sbjct 1999411 TTCTCATCGAGAATGTTCATTCAGAGATGTACAGTTTACTAATAGATACTTACATCAGAG 1999352
Query 61376 A 61376
|
Sbjct 1999351 A 1999351
>seq657
Length=1571634
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| |||||||| || ||||| ||||| |||| || || ||
Sbjct 950063 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTTTGCTG 950004
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | |||||| || ||||| ||||| ||
Sbjct 950003 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTCTGTCTG 949944
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|| ||||||||||| | ||||||
Sbjct 949943 AGATTCAATGATGGCATACCAAAG 949920
Score = 89.7 bits (98), Expect = 4e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || ||||| || ||||| || || |||||||||| || ||||| ||||| || |
Sbjct 947903 CATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGCTCTTCCTT 947844
Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459
|| ||| || |||||| ||||||||||||||||| ||||| || ||||||||
Sbjct 947843 CCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGTA 947784
Query 66460 GATGGCGAA 66468
|| || ||
Sbjct 947783 AATAGCAAA 947775
>seq78
Length=6419775
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/116 (78%), Gaps = 2/116 (2%)
Strand=Plus/Minus
Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314
|||| || ||| || ||||| || ||||| ||||||| || |||||||| ||||||||
Sbjct 5587162 TGGAGCGATTTAGC-CAGGAAGTTCAAGTCACGGAGGCCCGCTGTTTCTATGGCTTCCAA 5587104
Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
||||||||||| || | || || || ||||||||| | || || || || |||||
Sbjct 5587103 ATTGCCATGGAAAACATACATTCTGAAATGTACAGTCTCCTGATTGACACCTACAT 5587048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397418176623440
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