Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq204139 107 8e-21 seq939413 100 1e-18 seq162880 96.9 1e-17 seq767867 87.8 7e-15 seq113522 84.2 9e-14 seq966036 78.8 4e-12 seq514093 75.2 5e-11 >seq204139 Length=274 Score = 107 bits (118), Expect = 8e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||| ||||| ||||||||||| ||| |||| |||||||||||||| ||||| Sbjct 104 GTTAGGACCCAAAAGACGGTGAACTATGTCTGGGCAGGGCGAAGCCAGAGGAAATTCTGG 45 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||||| || |||||| ||| |||||||||| ||||| Sbjct 44 TGGAGGTCCGTAGCGGTCCTGATGTGCAAATCGGTCGTC 6 >seq939413 Length=1232 Score = 100 bits (110), Expect = 1e-18 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 || |||||||| ||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 952 CCTGAAAGATGA--AACTATGCCTGGGCAGGGTGAAGCCAGTGGAAACTCTGGTGGAGGT 1009 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| || ||| ||| ||||||| || || || |||||||||||| || Sbjct 1010 CTGTAGCAGTCCTGACGTTCAAATCGGTCATCCAACCTGGGTATAGGGGTGA 1061 >seq162880 Length=255 Score = 96.9 bits (106), Expect = 1e-17 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 140 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 199 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 | ||| ||||||||||| ||||||| || | ||||| ||||||| ||||| Sbjct 200 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTT 255 >seq767867 Length=865 Score = 87.8 bits (96), Expect = 7e-15 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || ||| |||||| | ||||||| ||||||| Sbjct 726 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCTTCTAAGGCTAAAT 785 Query 100 ---ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | || ||||||||||| |||| || | | ||||| ||||||| |||||| Sbjct 786 ACCACCAGCATGAGACCGATAGTCAACAATTACCATAAGGGAAAGTTGAAAAGAACTTTG 845 Query 157 GAAAGAGAGTTAAAAAG 173 | |||||||| || || Sbjct 846 AAGAGAGAGTTCAAGAG 862 >seq113522 Length=235 Score = 84.2 bits (92), Expect = 9e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 177 GTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 235 >seq966036 Length=1303 Score = 78.8 bits (86), Expect = 4e-12 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||| || ||||||| |||||||||||||||||||| ||| |||||| | ||| || Sbjct 621 TGGTGGACCATGCCTGGGCAGGGTGAAGCCAGAGGAAACACTGCTGGAGGTCCACAGTGG 680 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | || || ||||||| || ||| | |||| ||||| || Sbjct 681 TCATGATGTACAAATCGGTCATCAGACCTGGGAATAGGAGC 721 >seq514093 Length=509 Score = 75.2 bits (82), Expect = 5e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 ||||||||||| |||||||||||||||||||||||| ||||| | ||| | ||| Sbjct 186 AACTATGCCTGGGACGGGTGAAGCCAGAGGAAACTCTGGGGGAGGTCAGTAGCATTCCTG 127 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 | ||||||||| | ||| | |||||||| || Sbjct 126 GAGTGCAAATCAGTGGTCTCACCTGGGTATAAGG 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2048637354400