Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1418558 167 4e-39 seq1457724 80.6 4e-13 seq632521 80.6 4e-13 >seq1418558 Length=5428 Score = 167 bits (184), Expect = 4e-39 Identities = 182/237 (77%), Gaps = 16/237 (7%) Strand=Plus/Plus Query 30 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGC 89 |||| |||| | || ||||||||||||||||||||||||||| |||| ||| || Sbjct 4714 GTGCAGCCCTGGAC--CTAAGGGCATCACAGACCTGTTATTGC-TCAATCTT-----GGG 4765 Query 90 TGGAA----GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGTCG---ATGGGG 141 ||| | |||| ||| ||||||||| | |||||||| ||| | ||| | Sbjct 4766 TGGCAAATTGCCATCTGTCTTTCTAAGAAGTTGGACACCAACCGCTAGGGGGTCATGTAG 4825 Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| || ||| | |||||||||||||||||| |||||||| Sbjct 4826 CTAGTTAGCATGACAGAGTCTCATTTGTTTTTGGAATTAACCAGACAAATTTCTCCACCA 4885 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||||||| ||||||||||||||| | ||||| ||||||||||||||||||||| Sbjct 4886 ATTAAGAACAGCCATGCACCACCACAAACAGAATTGAGAAAGAGCTATCAATCTGTC 4942 >seq1457724 Length=10271 Score = 80.6 bits (88), Expect = 4e-13 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | || |||| ||| ||| ||||||||||||||||| |||||||||||| Sbjct 7116 TTAGCATGCTAGAATCTCATTCATTAGTGGAATTAACCAGACAAACTGCTCCACCAACTA 7175 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||| ||||||||| |||| |||| ||| ||| || ||||||||| Sbjct 7176 AGATAAGCCATGCACTCCCACATATAGTGATGAGACAGAACTGTCAATCTGT 7227 >seq632521 Length=653 Score = 80.6 bits (88), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 || ||||||||||| || ||| | |||| ||||||||| |||||| ||||||||||||| Sbjct 196 TCAGTCAGTGTAGCATGCATGCAGACCAGGACATCTAAGTGCATCATAGACCTGTTATTG 137 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||||||| | || | | |||| || ||||||||||| Sbjct 136 -CTCAAACTT-GGGTAGCGGAATGCCACTA---CCTCTAAGAAG 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785513833968