Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq728873 347 2e-93 seq1128521 300 3e-79 seq602181 203 5e-50 seq1005657 145 1e-32 seq707071 84.2 4e-14 >seq728873 Length=798 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 294 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 235 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 234 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 175 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 174 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 115 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 114 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 55 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 54 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 1 >seq1128521 Length=1873 Score = 300 bits (332), Expect = 3e-79 Identities = 245/295 (83%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||| ||||||||||||||||||||||||| Sbjct 776 TACTGAGCAGGATTACCATGGCAACAACACATCAACAGTAGGGTAAAACTAACCTGTCTC 717 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || ||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 716 AGGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTG 657 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||| ||||| |||||||||||||| || | |||| Sbjct 656 AATTCTGCTTCACAATGATAGGAAGAGCCAACATCAAAGGATCAAAAAGCGACATTGCTA 597 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||||||||||||||||| |||| | | | Sbjct 596 TGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCACCTG-C 538 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | | |||||| | ||||| |||||||| ||| ||||| || Sbjct 537 TTAAAACCCAAAAGTCAGAAGGATTGTGAGGCCCCACTTTCACGGTCTGTATCCA 483 >seq602181 Length=613 Score = 203 bits (224), Expect = 5e-50 Identities = 141/160 (88%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 75 CAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134 |||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| | Sbjct 221 CAGCTCACACTCCCTATTAGTGGGTGAGCAATCCAACGCTTGACGAATTCTGCTTCACAA 280 Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 |||||||||||||| ||||| | |||||||||||| | || |||||||||||||||| | Sbjct 281 TGATAGGAAGAGCCAACATCAATGGATCAAAAAGCTATGTTGCTATGAACGCTTGGCCAC 340 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||| ||||||||||||| ||||||||||| |||||| Sbjct 341 CACAAGCTAGTTATCCCTGTGATAACTTTTCTGACACCTC 380 >seq1005657 Length=1417 Score = 145 bits (160), Expect = 1e-32 Identities = 128/156 (82%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 || |||||||| ||||||| |||| || | ||||||||||||||||||||||| ||| | Sbjct 5 CTATCTCATGATGGTCTAA-CCCAACTTATGTTCCCTATTAGTGGGTGAACAACACAATG 63 Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||| |||| |||||| ||||||||||||||| ||||| ||| || |||||||| Sbjct 64 CTTGGTAAATTTTGCTTCACAATGATAGGAAGAGCCAACATCAAAGAAT-GAAAAGCAAT 122 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 | |||||||||||| | |||||||||| ||||||| Sbjct 123 GCCGCTATGAACGCATTGCTGCCACAA-TCAGTTAT 157 >seq707071 Length=763 Score = 84.2 bits (92), Expect = 4e-14 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 || ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 200 CTGTGAACTCTTGGCTACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGATACCTCAT 259 Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 || | ||| | | || | |||| || | ||| ||| | |||| |||||| Sbjct 260 GCTTAAAACCCCAAAGGTCAGAAGGGTCCTGATGCCCTGCTTCCCTGGTCTGTATT 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 841907578368