Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq494672 315 2e-83 seq1136889 168 2e-39 seq164082 152 2e-34 seq833695 104 7e-20 seq567991 77.0 1e-11 >seq494672 Length=489 Score = 315 bits (348), Expect = 2e-83 Identities = 364/489 (74%), Gaps = 56/489 (11%) Strand=Plus/Minus Query 69 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC 128 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 CGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC 430 Query 129 TCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTA 188 |||||||||||||||||||||| ||||||||| |||||| | |||||||||||| Sbjct 429 TCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGC 370 Query 189 TCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCC 247 |||||||||||||||||||||||||| || ||||| | |||||| | | || | Sbjct 369 GACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGC 310 Query 248 ATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC----------CCG 288 |||||| | | ||||| || ||||||| || ||| ||| Sbjct 309 GTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCG 250 Query 289 AA-------GGGCGTTG--------GTTTTTTATCTAATAAATACA------CCCCTTCC 327 | ||| | || | |||| |||| |||||| || |||| | Sbjct 249 GAGCCGGGGGGGAGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCGC 190 Query 328 GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380 |||| ||||| | |||||||||||||||||||||||||| |||||||| | Sbjct 189 GAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAG 132 Query 381 TAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTC 435 ||| | || | | | |||| ||| ||||||||||||||||||||||||||||||| Sbjct 131 TAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTC 72 Query 436 ACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 |||||| | | ||||||||||||||||||||||||||||||||||||||||| | Sbjct 71 ACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-C 13 Query 496 TACTGGCAG 504 ||||||||| Sbjct 12 TACTGGCAG 4 >seq1136889 Length=1911 Score = 168 bits (186), Expect = 2e-39 Identities = 148/183 (81%), Gaps = 16/183 (9%) Strand=Plus/Plus Query 46 TTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTG 105 || ||||||||||||||| |||||||||||| | |||||||||||||||| Sbjct 1602 TTTTTGTCACTACCTCCC-----------TGGGTAATTTGCACACCTGCTGCCTTCCTTG 1650 Query 106 GATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCC 165 |||||||||||| ||||||| ||||||| |||||||||||||||| |||||| || ||| Sbjct 1651 GATGTGGTAGCCATTTCTCAAGCTCCCTTTCCGGAATCGAACCCTGATTCCCTGTCACCT 1710 Query 166 GTTGATACCATGGTAGGC--CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGA 223 |||| | ||||| |||| || | |||||||||||||||||||| |||| | ||| | Sbjct 1711 GTTGTCATCATGGCAGGCATGACGA--CTACCATCGAAAGTTGATAGAGCAG-AGTTTTA 1767 Query 224 ATG 226 ||| Sbjct 1768 ATG 1770 >seq164082 Length=255 Score = 152 bits (168), Expect = 2e-34 Identities = 104/116 (90%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 116 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 57 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 56 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 1 >seq833695 Length=989 Score = 104 bits (114), Expect = 7e-20 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 51 GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 |||||||||||| | ||| ||| ||||||||||| || | | |||||||||||||||| Sbjct 643 GTCACTACCTCCATGGGTCAGGAGTGGGTAATTTGTGCACTTACTGCCTTCCTTGGATGC 584 Query 111 GGTAGCCGTTTCTCAGGCTCCCTCTCC 137 ||||| |||||||||||||||||||| Sbjct 583 GGTAGGTGTTTCTCAGGCTCCCTCTCC 557 >seq567991 Length=570 Score = 77.0 bits (84), Expect = 1e-11 Identities = 46/47 (98%), Gaps = 1/47 (2%) Strand=Plus/Plus Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 AGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1488316018688