Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1398653 111 1e-19 seq339792 89.7 4e-13 seq1424254 84.2 2e-11 >seq1398653 Length=4711 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| ||||||||||| || | ||||| || |||||||| ||||| || | Sbjct 3743 TGGAGCGTTTTAGTCAGGAGGTGCAGGTTCCAGAGGCTCGATGTTTCTATGGCTTTCAAA 3802 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| |||||||||||||||||| | || || ||||| |||||||| | Sbjct 3803 TTCTCATCGAGAATGTTCACTCGGAGATGTACAGTTTACTAATAGATACTTACATCAGAG 3862 Query 61376 A 61376 | Sbjct 3863 A 3863 >seq339792 Length=355 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||||||||| || || ||||| | ||||||||||| || | || || |||| ||||| Sbjct 272 AGAGAATCCCCGCCGCTTCGTTGTCTTCCCCATCGAATACCATGACATCTGGCAGATGTA 213 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 ||| ||||| || ||||| |||||||||| |||||||| Sbjct 212 CAAGAAGGCTGAGGCTTCGTTCTGGACGGCTGAGGAGGT 174 >seq1424254 Length=5701 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||| || ||||| || || || | Sbjct 1903 CATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGTTCTTCCTT 1844 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| ||||| |||||| ||||| ||||||||||| ||||| || ||||||| Sbjct 1843 CCCTGTGTTTTTTTT-CAAGTCAAGGAATTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 1785 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 1784 AAATAGCAAA 1775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390483463473920