Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4908 120 5e-25 SEQ39177 80.6 4e-13 SEQ18891 78.8 1e-12 SEQ16969 77.0 5e-12 >seq4908 Length=101483 Score = 120 bits (132), Expect = 5e-25 Identities = 169/230 (73%), Gaps = 22/230 (10%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCC-CAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||||||| || || | ||| ||| ||||||||||| |||||||||||||||||| | Sbjct 55809 CAGTGTAAGGCATGTACAGCCGCAGG-CATCTAAGGGCCTCACAGACCTGTTATTGCTGT 55867 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC---CAGCCACCAACCATA 131 | || |||||| | |||| | ||||| ||||||||| | |||||||| Sbjct 55868 C-----TCTGATGGCTGAATGCCACTTGTCCCGCTAAGAAGCTGGAGGACACCAACC--G 55920 Query 132 GTCGATGGG-------GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | || ||| ||| |||||| || | ||||| ||| |||| |||||||| || Sbjct 55921 GCTGAGGGGTCTCATAACTAGTTAGCATGTCAGAGTCTCCTTCCTTATGGGAATTAAGCA 55980 Query 185 GA-CAAATCACTCCACCAAC-TAAGAACGGCCATGCACCACCACCCATAG 232 || |||| | |||||||||| |||||| | || ||||||||||||||||| Sbjct 55981 GATCAAACCTCTCCACCAACTTAAGAAGGACCGTGCACCACCACCCATAG 56030 >SEQ39177 Length=65891 Score = 80.6 bits (88), Expect = 4e-13 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| | |||| |||| || ||||||||||||||||||||||||| || Sbjct 30654 GTCAGTGTAGCGTGTGTGCAGCCCCAGGCAGGTAAGGGCATCACAGACCTGTTATTG-CT 30596 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || | ||| || | ||| | | |||||||||||| Sbjct 30595 CAATC-TCAAGTGGTTGAACACCACTTGCCCCTCTAAGAAG 30556 >SEQ18891 Length=54496 Score = 78.8 bits (86), Expect = 1e-12 Identities = 72/90 (80%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTC-TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||| |||||| || | ||| || ||| ||||| || |||||||| ||||| ||||||| Sbjct 23592 CTAGTTAGCATGTCAGAGTCATCATTCATTATCAGACCTAACCAGATAAATCTCTCCACC 23651 Query 201 AACTAAGAACGGCCATGCACCACCACCCAT 230 ||||| ||| |||| ||||||| |||||| Sbjct 23652 AACTACCAACAGCCAGGCACCACGACCCAT 23681 >SEQ16969 Length=59557 Score = 77.0 bits (84), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC- 236 ||| | ||| |||| ||||||||||||||||| |||||| |||||| || || |||| Sbjct 17476 TTAGCAAGAAAAATTGCTCCACCAACTAAGAACAGCCATGAACCACCTCCAATGCAATCG 17417 Query 237 AAGAAAGAGCTATCAATCTGTC 258 | | || ||||||||||||||| Sbjct 17416 AGGGAATAGCTATCAATCTGTC 17395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796055679987