Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value SEQ38540 120 5e-25 SEQ39520 100 5e-19 >SEQ38540 Length=74250 Score = 120 bits (132), Expect = 5e-25 Identities = 149/203 (73%), Gaps = 16/203 (8%) Strand=Plus/Minus Query 76 AGCTCA-CGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134 |||||| | ||||||||||| ||||||||| ||||||||| | |||||| | Sbjct 19276 AGCTCATCCCTCCCTATTAGTAGGTGAACAAGCCAACGCTTGGC------TGCTTCACAA 19223 Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 |||| |||||||| || ||||||| |||| | | || |||||| |||||| | Sbjct 19222 TGATGGGAAGAGCTGA------AGGATCAGAAAGTGGCATTGCCATGAACTCTTGGCCAC 19169 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA 254 ||| |||||||||||| |||||||||||||||| | || || | ||||| | || Sbjct 19168 CACCAGCCAGTTATCCTTGTGGTAACTTTTCTGATATCT---GCTTAAAATTCAAAAGGT 19112 Query 255 CTAAAGGATCGATAGGCCACACT 277 | |||||||| ||||| |||| Sbjct 19111 CAGAAGGATCGTGAGGCCCCACT 19089 >SEQ39520 Length=111625 Score = 100 bits (110), Expect = 5e-19 Identities = 80/98 (82%), Gaps = 10/98 (10%) Strand=Plus/Minus Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA----------GAGCCGACA 152 ||||||||||||| |||||||||||| ||||||||| ||||||||| Sbjct 65171 CAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGACACAATGATAGGAGCCGACA 65112 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 ||||||||||||||||| |||||||||||||||||||| Sbjct 65111 TCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGG 65074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853576127712