Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1689 343 5e-92 SEQ10701 235 2e-59 SEQ46830 123 8e-26 >seq1689 Length=132204 Score = 343 bits (380), Expect = 5e-92 Identities = 255/297 (86%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| |||||| ||||||||||||| ||| ||||| | |||||| | ||||||||| Sbjct 4919 CTCTCACTTACTCTACACCTCTCATGTCTCTTCACTGTGCTAGACTAGCGACAAGCTCAA 4860 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || ||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||| | Sbjct 4859 --GGTTCTTCTTTCCCCGCTTATTCCTCCAAGCCTGTTCCCTTGGCTGTGGTTTTGCTGG 4802 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||| | ||||||||||||| ||||| || ||||| |||||| | ||| |||||||||| Sbjct 4801 ATAGTGGGTAGGGACAGTGGGGATCTCATTCATCCACTCATGCACCTCATTAATTAGATG 4742 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | || |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 4741 ATGAAACATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCCTGCTTCA 4682 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||| |||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 4681 TTGAATATCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACGTCACATCAACA 4625 >SEQ10701 Length=19909 Score = 235 bits (260), Expect = 2e-59 Identities = 168/192 (88%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| |||||||||||| ||| ||||| | | | ||||| | ||||||| | Sbjct 16984 CTCCCACTTATTTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAAATTCAAGCTTA 17043 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 17044 ACAGGGTCTTCTTTCTATGCTGATTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTG 17103 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| || |||||||||||||||| || ||||||||||| | |||||||||||||| Sbjct 17104 GATAGTAGGTAAGGACAGTGGGAATCTCATTCATCCATTCATGTGAGTCACTAATTAGAT 17163 Query 416 GACGAGGCATTT 427 ||| |||||||| Sbjct 17164 GACAAGGCATTT 17175 >SEQ46830 Length=78490 Score = 123 bits (136), Expect = 8e-26 Identities = 85/96 (89%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||||| Sbjct 71554 AGAGAGTCATAGTTACTCCTTCTGTTTACCCGAGCTTCATTGAATTTCTTCACTTTGACA 71495 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| | |||||||||| ||||||| |||||| Sbjct 71494 TTCAGAGTATTGGGCAGAAAATACATTGCTTCAACA 71459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633623225696