Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2245 226 9e-57 SEQ22251 208 2e-51 seq4644 118 3e-24 seq9308 93.3 1e-16 >seq2245 Length=89621 Score = 226 bits (250), Expect = 9e-57 Identities = 383/545 (70%), Gaps = 66/545 (12%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | ||| || ||||||| ||||| | |||||||||| Sbjct 54744 ACTCATTCCAATTACAGGGCCTCCAAAAAGTCCTGTATTGTTATTTTTCATCACTACCTC 54803 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| |||||||||| | | ||||||| |||||||||||||||||| ||| Sbjct 54804 CCCGGGTCGGGAGGAGGTAATTTGCTCACTTGCTGCCCTCCTTGGATGTGGTAGCCATTT 54863 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 | ||| ||||||||| ||||| ||||||| ||||| || ||| |||| |||||||||| Sbjct 54864 CCCAGACTCCCTCTCTGGAATTGAACCCTGATTCCTGGTCACCTGTTGTCACCATGGTAG 54923 Query 182 GC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG------AACCATCG 234 || || | ||| ||| |||| ||||||||||||| ||| ||||| ||||| | Sbjct 54924 GCACAGT-GACTATCATTGAAAATTGATAGGGCAGATATTAGAATGGGTTGTCACCAT-G 54981 Query 235 CCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG--------AGCCC 286 | | || || ||| | | | ||||| | ||||||| | | ||| Sbjct 54982 ACAGAGGTGGGTGAT-CGAGTGG--AGGTTAT--CTAGTCACCAAAGCTACCCCTACCCC 55036 Query 287 C-------GAAGGGCGTT-----GGTT---TTTTATCTAATAAATACACCCCTTCCGA-- 329 | | |||| | | |||| ||| ||| |||||| ||| | | || | Sbjct 55037 CAGAGCTGGGAGGGAGCTGACCAGGTTGGGTTTGTTCTGATAAATGCACGCATCCCCACT 55096 Query 330 AG--TCGGGGTT-------TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380 || | |||||| || ||||||||||||||||||||| ||| |||||||| | Sbjct 55097 AGGATGGGGGTTAGCACCCATTGACATGTATTAGCTCTAGAATTAACACAGTTATCCAAG 55156 Query 381 TAGTA-AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 ||| | ||| | || | || || || ||||| |||||| | ||| Sbjct 55157 TAGGAGAGG------------AGGGAGA---GACCAAAGGAACCATTTGCAGTTCCCCTG 55201 Query 440 TATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 || || | ||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 55202 TACCAGCTGTGTGTACTTAGACATGCATGGCTTAATATTTGAGACAAGCATATG-CTACT 55260 Query 500 GGCAG 504 ||||| Sbjct 55261 GGCAG 55265 >SEQ22251 Length=7804 Score = 208 bits (230), Expect = 2e-51 Identities = 185/226 (82%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||||| || |||||| ||||||| ||||| | |||||||||| Sbjct 1511 ACTCATTCCAATTACAAGGCCTTGAAAGAGTCCTGTATTGTTATTTTTCATCACTACCTC 1452 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | || |||| ||||||||||| | |||||||||||||||||||||||||| | ||| Sbjct 1451 CCAG-GTGGGGAGTGGGTAATTTGATCACCTGCTGCCTTCCTTGGATGTGGTAGACATTT 1393 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||| | ||||| ||||||| ||||| | | |||| | | |||||||||| Sbjct 1392 CTCAGGCTCCCTCCCTGGAATTGAACCCTGATTCCACTTCACCCATGGTCACCATGGTAG 1333 Query 182 GCCACTAT-CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 | || | ||||||||||||||||||| |||||| ||| |||| Sbjct 1332 G-AACGGTGACTACCATCGAAAGTTGATAAGGCAGACATTCAAATG 1288 >seq4644 Length=201759 Score = 118 bits (130), Expect = 3e-24 Identities = 105/130 (81%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||| |||||||||| | | || |||||| ||||||| | ||||| | |||||||||| Sbjct 112544 ACTTATTCCAATTATAGGGCCTTGAAAGAGTCCTGTATTATTATTTTTCATCACTACCTC 112603 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| || |||| | |||||||||| |||||||||||||| | |||||||||||| ||| Sbjct 112604 CCCAGGTTGGGAGTCGGTAATTTGCATGCCTGCTGCCTTCCATTGATGTGGTAGCCATTT 112663 Query 122 CTCAGGCTCC 131 |||| |||| Sbjct 112664 CTCAAACTCC 112673 >seq9308 Length=61444 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 5/104 (5%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAA 397 || ||| |||||||||||||||||||| ||||| || |||| | | | | | ||| Sbjct 2198 AGGATGAATTAGCTCTAGAATTACCACAGTTATTCAAGTAGGAGAGGAGCGAGCGACCAA 2257 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 | ||| | |||||||||||||||||||||||| |||||||||| Sbjct 2258 AGGAACCACAACTGATTTAATGAGCCATTCGCACTTTCACTGTA 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508943566592