Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value SEQ13259 111 1e-19 SEQ18818 100 2e-16 SEQ32083 87.8 1e-12 >SEQ13259 Length=38172 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || || |||||||| || ||||| ||||| |||| ||||| || Sbjct 17264 GGTGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTG 17205 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| ||||| ||||| || Sbjct 17204 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTCTGTCTG 17145 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 17144 AGACTCAATGATGGCATACCAAAG 17121 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||| || ||||| || || || | Sbjct 15322 CATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGTTCTTCCTT 15263 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 15262 CCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 15204 Query 66459 AGATGGCGAA 66468 | ||||| || Sbjct 15203 AAATGGCAAA 15194 >SEQ18818 Length=61900 Score = 100 bits (110), Expect = 2e-16 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || ||||||||||| || | ||||| || |||||||| ||||| || Sbjct 3961 TGGAGCGCTTTAGC-CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAA 3903 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 ||| ||| |||||||| ||||| |||||||||||| | || || || || |||||||| Sbjct 3902 ATTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTGATAGACACTTACATCAGA 3843 Query 61375 GA 61376 || Sbjct 3842 GA 3841 >SEQ32083 Length=112626 Score = 87.8 bits (96), Expect = 1e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || ||||| | ||||| ||||||||||| ||||| || Sbjct 103844 TGGAGCGATTTAGC-CAAGAAGTTCAAGTCACAGAGGCCCGTTGTTTCTATGGCTTTCAA 103786 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 ||||||||||| || | ||||| || ||||||||| | || || || || ||||| | | Sbjct 103785 ATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAG 103726 Query 61375 GA 61376 || Sbjct 103725 GA 103724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397100776471280