Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq232 161 5e-38 seq97 161 5e-38 seq129 143 1e-32 seq31 116 2e-24 seq166 113 2e-23 seq206 109 3e-22 seq80 95.1 6e-18 seq301 82.4 4e-14 seq914 80.6 1e-13 seq529 80.6 1e-13 >seq232 Length=115493446 Score = 161 bits (178), Expect = 5e-38 Identities = 97/102 (95%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46647151 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 46647210 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| |||| | ||||||||| |||||||||| Sbjct 46647211 CCGAATCCCCGCCGCGCGCCGCGGCGCGGGAAATGTGGCGTA 46647252 Score = 91.5 bits (100), Expect = 7e-17 Identities = 81/102 (79%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||| |||||||||||||||||||| |||||| |||||||| ||| Sbjct 46521380 GGAAAAGAAACTAAACAGGATTCCCTCAGTAACGGTGAGTGA------AAGAGCCCCGCG 46521433 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||| ||| || | | | ||| | ||| || ||||||| Sbjct 46521434 CCGAATGCCCTCCTCATGCCGTGGCTCCGGAAATATGGCGTA 46521475 >seq97 Length=173707219 Score = 161 bits (178), Expect = 5e-38 Identities = 97/102 (95%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 91135970 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 91136029 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| |||| | ||||||||| |||||||||| Sbjct 91136030 CCGAATCCCCGCCGCGCGCCGCGGCGCGGGAAATGTGGCGTA 91136071 Score = 143 bits (158), Expect = 1e-32 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123059757 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 123059816 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| || | ||||| ||| ||||| |||| Sbjct 123059817 CCGAATCCCCGCCACGTGCCCTGGCGCAGGAAATGTGACGTA 123059858 >seq129 Length=145729302 Score = 143 bits (158), Expect = 1e-32 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 2217094 GGAAAAGAAACTAACCAGGATTCCCTCAATAACGGCGAGTGAACAGGGAAGAGTCCAGCG 2217035 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||||||| || | | ||||||||| |||||||||| Sbjct 2217034 CCAAATCCCCGCCGCGTGCCGTGGCGCGGGAAATGTGGCGTA 2216993 Score = 143 bits (158), Expect = 1e-32 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 2221064 GGAAAAGAAACTAACCAGGATTCCCTCAATAACGGCGAGTGAACAGGGAAGAGTCCAGCG 2221005 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||||||| || | | ||||||||| |||||||||| Sbjct 2221004 CCAAATCCCCGCCGCGTGCCGTGGCGCGGGAAATGTGGCGTA 2220963 >seq31 Length=266435125 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||| ||||||||||||| || || ||||||||| ||||||||||| Sbjct 123536 GGAAAAGAAACTAACCAGTATTCCCTCAGTAATGGTGAATGAACAGGGGAGAGCCCAGCG 123477 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| | | | ||| | || |||||||||| Sbjct 123476 CCGAATCCCCGCCGCATGCCGTGGCTGGTGAAATGTGGCGTA 123435 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 161555478 GGAAAAGAAACTCACCAGGATTCCCTCAGTAACAGCGAGTGAACAGGGAAGAGCCCATCG 161555537 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| || | | | |||| ||| |||||| ||| Sbjct 161555538 CCGAATCCCTGCTGTGTGCAGTGGCGTGGGGAATGTGGTGTA 161555579 Score = 107 bits (118), Expect = 9e-22 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||| || Sbjct 161560518 GGAAAAGAAACTCACCAGGAATCCCTCAGTAACAGCGAGTGAACAGGGAAGGGCCCATCG 161560577 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| || | | | || | ||| |||||||||| Sbjct 161560578 CCGAATCCCTGCTGTGTGCCGTGGTGTGGGGAATGTGGCGTA 161560619 Score = 89.7 bits (98), Expect = 2e-16 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||||| || Sbjct 161554215 GGAGAAGAAACTCACCAGGAATCCCTCAGTAACAGCGAGTGAACAGGGAAGAGCCCATCG 161554274 Query 61 CCGA 64 | || Sbjct 161554275 CTGA 161554278 >seq166 Length=122095297 Score = 113 bits (124), Expect = 2e-23 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||| ||||| ||||||||||||||| ||||| || ||||||||| ||||||||||| || Sbjct 7466484 GGAAGAGAAAGTAACCAGGATTCCCTGAGTAATGGTGAGTGAACAAGGAAGAGCCCATCG 7466425 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||| ||| || | | ||||||||| ||||||| || Sbjct 7466424 CTGAATCCCTGCCGCGTGCCGTGGCGCGGGAAATGTGGCATA 7466383 Score = 78.8 bits (86), Expect = 4e-13 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 27 CAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCG 86 |||||| || || |||||| ||||||||||| ||| ||||||| ||| || | | |||| Sbjct 7464931 CAGTAATGGTGAATGAACAAGGAAGAGCCCATCGCTGAATCCCTGCCGCGTGCCGTGGCG 7464872 Query 87 CGGGACATGTGGCGTA 102 ||||| |||||||||| Sbjct 7464871 CGGGAAATGTGGCGTA 7464856 >seq206 Length=52716770 Score = 109 bits (120), Expect = 3e-22 Identities = 72/77 (94%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCC-AGC 59 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1394 GGAAAAGAA-CTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCTAGT 1452 Query 60 GCCGAATCCCCGCCCCG 76 |||||||||||||| || Sbjct 1453 GCCGAATCCCCGCCGCG 1469 Score = 93.3 bits (102), Expect = 2e-17 Identities = 70/77 (91%), Gaps = 4/77 (5%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCC-AGC 59 ||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| || Sbjct 938 GGAAAAGAA-CTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGG-AGAGCCCTAGT 995 Query 60 GCCGAATCCCCGCCCCG 76 | |||||||||||| || Sbjct 996 G-CGAATCCCCGCCGCG 1011 >seq80 Length=184226339 Score = 95.1 bits (104), Expect = 6e-18 Identities = 82/102 (80%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 166662878 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCTAGTGA------AAGAGCCCCGCG 166662825 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||| ||| | | | | ||| | ||| |||||||||| Sbjct 166662824 CCGAATGCCCTCTGCATGCCGTGGCTCCGGAAATGTGGCGTA 166662783 >seq301 Length=56205956 Score = 82.4 bits (90), Expect = 4e-14 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 4 AAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCG 63 |||||||||||||| ||||||||||||| | |||||||||| ||||||||||| || Sbjct 56185050 AAAGAAACTAACCAACATTCCCTCAGTAAAGATGAGTGAACAGAGAAGAGCCCAGTACCA 56184991 Query 64 AATCCCCGCC 73 ||||||| || Sbjct 56184990 AATCCCCACC 56184981 >seq914 Length=23475 Score = 80.6 bits (88), Expect = 1e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 ||||||||||||||| |||||||||| |||||||||||||||| ||||||||| || Sbjct 8665 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAAGCGGGAAGAGCTCA 8721 >seq529 Length=9310 Score = 80.6 bits (88), Expect = 1e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 ||||||||||||||| |||||||||| |||||||||||||||| ||||||||| || Sbjct 8709 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAAGCGGGAAGAGCTCA 8765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230397937200