Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq232 91.5 9e-17 seq117 91.5 9e-17 seq97 91.5 9e-17 seq1 91.5 9e-17 seq154 82.4 5e-14 seq129 77.0 2e-12 seq31 77.0 2e-12 >seq232 Length=115493446 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 46644960 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 46644903 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 46644902 TAAT-CAACGCAAGCT 46644888 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 46685854 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 46685797 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 46685796 TAAT-CAACGCAAGCT 46685782 >seq117 Length=147991367 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 30629605 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 30629548 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 30629547 TAAT-CAACGCAAGCT 30629533 >seq97 Length=173707219 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 91131763 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 91131706 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 91131705 TAAT-CAACGCAAGCT 91131691 >seq1 Length=282763074 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 11907798 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 11907855 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 11907856 TAAT-CAACGCAAGCT 11907870 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 11968887 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 11968830 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 11968829 TAAT-CAACGCAAGCT 11968815 >seq154 Length=133307652 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||| |||| | ||||||||||||||||||| Sbjct 126874875 CTCACTAAACCATC-CAATCGGTAGTA-GCGAAGGGCAGTGTGTACAAAGGGCAGGGACT 126874818 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 126874817 TAAT-CAACGCAAGCT 126874803 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||| |||| | ||||||||||||||||||| Sbjct 126881756 CTCACTAAACCATC-CAATCGGTAGTA-GCGAAGGGCAGTGTGTACAAAGGGCAGGGACT 126881699 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 126881698 TAAT-CAACGCAAGCT 126881684 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||| |||| | ||||||||||||||||||| Sbjct 126888876 CTCACTAAACCATC-CAATCGGTAGTA-GCGAAGGGCAGTGTGTACAAAGGGCAGGGACT 126888819 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 126888818 TAAT-CAACGCAAGCT 126888804 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||| |||||||||||||| Sbjct 13725714 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTGCAAAGGGCAGGGACT 13725771 Query 109 TAA 111 ||| Sbjct 13725772 TAA 13725774 >seq129 Length=145729302 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||| ||| || ||||||||||||||||||| Sbjct 22054350 CTCACTAAACCATC-CAATCGGTAGTA-GCGAAGGGTGGTGTGTACAAAGGGCAGGGACT 22054293 Query 109 TAATACAACGCAAGCT 124 |||| |||| |||||| Sbjct 22054292 TAAT-CAACACAAGCT 22054278 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || | ||||||| |||| |||||| ||||||||||| ||||||| Sbjct 287177 CTCACTAAACCATC-CACTGGGTAGTA-GCGAAGGGCGGTGTGTACAAAGGACAGGGACT 287234 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 287235 TAAT-CAGCGCAAGCT 287249 Score = 73.4 bits (80), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| || | ||| || ||||||||||||||||||| Sbjct 733488 CTCACTAAACCATC-CAATCGGTAGTA-GCAAAGGGTGGTGTGTACAAAGGGCAGGGACT 733545 Query 109 TAATACAACGCAAG 122 |||| ||||||||| Sbjct 733546 TAAT-CAACGCAAG 733558 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || | ||||||| |||| |||||| ||||||||||| ||||||| Sbjct 1674312 CTCACTAAACCATC-CACTGGGTAGTA-GCGAAGGGCGGTGTGTACAAAGGACAGGGACT 1674255 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 1674254 TAAT-CAGCGCAAGCT 1674240 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || | ||||||| |||| |||||| ||||||||||| ||||||| Sbjct 1676347 CTCACTAAACCATC-CACTGGGTAGTA-GCGAAGGGCGGTGTGTACAAAGGACAGGGACT 1676290 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 1676289 TAAT-CAGCGCAAGCT 1676275 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||| ||| | ||||||||||||||||||| Sbjct 99524283 CTCACTAAACCATC-CAATCGGTAGTA-GCGAAGGGTGCTGTGTACAAAGGGCAGGGACT 99524226 Query 109 TAATACAACGCAAGCT 124 |||| |||| |||||| Sbjct 99524225 TAAT-CAACTCAAGCT 99524211 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 64 CATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGC 123 || ||||||||| |||| ||| || ||||||||||||||||||| |||| |||||||||| Sbjct 99521673 CAATCGGTAGTA-GCGAAGGGTGGTGTGTACAAAGGGCAGGGACTTAAT-CAACGCAAGC 99521616 Query 124 T 124 | Sbjct 99521615 T 99521615 >seq31 Length=266435125 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| ||| ||||||| |||| ||| || ||||||||||||||||||| Sbjct 128824611 CTCACTAAACCATCCAATT-GGTAGTA-GCGAAGGGTGGTGTGTACAAAGGGCAGGGACT 128824554 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 128824553 TAAT-CAACGCAAGCT 128824539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300797306900