Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq914 223 4e-56 seq529 223 4e-56 seq232 96.9 4e-18 seq117 96.9 4e-18 seq97 96.9 4e-18 seq1 96.9 4e-18 >seq914 Length=23475 Score = 223 bits (246), Expect = 4e-56 Identities = 165/190 (87%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||| | ||||||||||||||||||||||||||| ||| ||||||||| | ||| ||||| Sbjct 153 GGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTACGCTTGAATA 212 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 213 CATTAGCATGGAATAATAGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTAGGACCG- 270 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| ||||||| ||||| | |||||| |||||||| ||||||||||| Sbjct 271 AAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTC 330 Query 181 TTGGATTTAT 190 || ||||||| Sbjct 331 TTAGATTTAT 340 >seq529 Length=9310 Score = 223 bits (246), Expect = 4e-56 Identities = 165/190 (87%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||| | ||||||||||||||||||||||||||| ||| ||||||||| | ||| ||||| Sbjct 167 GGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTACGCTTGAATA 226 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 227 CATTAGCATGGAATAATAGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTAGGACCG- 284 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| ||||||| ||||| | |||||| |||||||| ||||||||||| Sbjct 285 AAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTC 344 Query 181 TTGGATTTAT 190 || ||||||| Sbjct 345 TTAGATTTAT 354 >seq232 Length=115493446 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 46641699 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 46641758 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 46641759 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 46641816 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 46641817 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 46641872 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 46644023 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 46644082 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 46644083 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 46644140 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 46644141 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 46644196 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 46684917 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 46684976 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 46684977 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 46685034 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 46685035 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 46685090 >seq117 Length=147991367 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 30628668 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 30628727 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 30628728 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 30628785 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 30628786 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 30628841 >seq97 Length=173707219 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 91130826 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 91130885 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 91130886 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 91130943 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 91130944 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 91130999 >seq1 Length=282763074 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 11908735 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 11908676 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 11908675 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 11908618 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 11908617 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 11908562 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 11967950 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 11968009 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 11968010 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 11968067 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 11968068 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 11968123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511995263200